Fetch the names of individuals/genotypes in the core set generated from pcss.core Output

subset.pcss.core returns names of individuals/genotypes in the core collection from pcss.core Output.

Usage

# S3 method for class 'pcss.core'
subset(x, criterion = c("size", "variance", "logistic"), ...)

Arguments

x

An object of class pcss.core.

criterion

The core collection generation criterion. Either "size", "variance", or "logistic". See Details.

...

Unused.

Value

The names of individuals/genotypes in the core collection as a character vector.

Details

Use "size" to return names of individuals/genotypes in the core collection according to the threshold size criterion or use "variance" to return names according to the variability threshold criterion or use "logistic" to return names according to inflection point of rate of progress of cumulative variability retained identified by logistic regression.

See also

pcss.core

Examples

#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# Prepare example data
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

library(EvaluateCore)

# Get data from EvaluateCore

data("cassava_EC", package = "EvaluateCore")
data = cbind(Genotypes = rownames(cassava_EC), cassava_EC)
quant <- c("NMSR", "TTRN", "TFWSR", "TTRW", "TFWSS", "TTSW", "TTPW", "AVPW",
           "ARSR", "SRDM")
qual <- c("CUAL", "LNGS", "PTLC", "DSTA", "LFRT", "LBTEF", "CBTR", "NMLB",
          "ANGB", "CUAL9M", "LVC9M", "TNPR9M", "PL9M", "STRP", "STRC",
          "PSTR")
rownames(data) <- NULL

# Convert qualitative data columns to factor
data[, qual] <- lapply(data[, qual], as.factor)

#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# With quantitative data
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

out1 <- pcss.core(data = data, names = "Genotypes",
                  quantitative = quant,
                  qualitative = NULL, eigen.threshold = NULL, size = 0.2,
                  var.threshold = 0.75)

# Core sets
out1$cores.info
#>                   Method Size   VarRet
#> 1      By size specified  337 62.79839
#> 2  By threshold variance  532 75.00000
#> 3 By logistic regression  189 50.03205

# Fetch genotype names of core set by size criterion
subset(x = out1, criterion = "size")
#>   [1] "TMe-3163" "TMe-603"  "TMe-3685" "TMe-3605" "TMe-3292" "TMe-399" 
#>   [7] "TMe-3667" "TMe-3736" "TMe-3800" "TMe-3705" "TMe-616"  "TMe-2943"
#>  [13] "TMe-3573" "TMe-901"  "TMe-3628" "TMe-390"  "TMe-1730" "TMe-3730"
#>  [19] "TMe-2035" "TMe-3223" "TMe-2050" "TMe-2967" "TMe-812"  "TMe-608" 
#>  [25] "TMe-2853" "TMe-2996" "TMe-3694" "TMe-3701" "TMe-2983" "TMe-731" 
#>  [31] "TMe-2531" "TMe-707"  "TMe-412"  "TMe-717"  "TMe-761"  "TMe-1261"
#>  [37] "TMe-3415" "TMe-2963" "TMe-997"  "TMe-588"  "TMe-373"  "TMe-13"  
#>  [43] "TMe-798"  "TMe-1985" "TMe-861"  "TMe-3040" "TMe-2940" "TMe-1919"
#>  [49] "TMe-3089" "TMe-3581" "TMe-659"  "TMe-2043" "TMe-3392" "TMe-432" 
#>  [55] "TMe-3297" "TMe-705"  "TMe-623"  "TMe-929"  "TMe-1294" "TMe-1416"
#>  [61] "TMe-2955" "TMe-832"  "TMe-1307" "TMe-1646" "TMe-3319" "TMe-815" 
#>  [67] "TMe-427"  "TMe-3406" "TMe-3698" "TMe-728"  "TMe-2913" "TMe-421" 
#>  [73] "TMe-1283" "TMe-3641" "TMe-2204" "TMe-584"  "TMe-2196" "TMe-527" 
#>  [79] "TMe-1945" "TMe-863"  "TMe-3249" "TMe-3065" "TMe-27"   "TMe-694" 
#>  [85] "TMe-725"  "TMe-1011" "TMe-2966" "TMe-926"  "TMe-1472" "TMe-3130"
#>  [91] "TMe-3025" "TMe-3076" "TMe-2604" "TMe-700"  "TMe-1098" "TMe-994" 
#>  [97] "TMe-1272" "TMe-2937" "TMe-2952" "TMe-2916" "TMe-3565" "TMe-3396"
#> [103] "TMe-2329" "TMe-3659" "TMe-3601" "TMe-3281" "TMe-1158" "TMe-2040"
#> [109] "TMe-835"  "TMe-1339" "TMe-3475" "TMe-742"  "TMe-2151" "TMe-2984"
#> [115] "TMe-1958" "TMe-3034" "TMe-438"  "TMe-391"  "TMe-3485" "TMe-1137"
#> [121] "TMe-1286" "TMe-1248" "TMe-3398" "TMe-1079" "TMe-3087" "TMe-2518"
#> [127] "TMe-473"  "TMe-2914" "TMe-3639" "TMe-3363" "TMe-585"  "TMe-631" 
#> [133] "TMe-1806" "TMe-3329" "TMe-2441" "TMe-1129" "TMe-2226" "TMe-729" 
#> [139] "TMe-2905" "TMe-736"  "TMe-2906" "TMe-1300" "TMe-1723" "TMe-756" 
#> [145] "TMe-787"  "TMe-3633" "TMe-1124" "TMe-1101" "TMe-1388" "TMe-2688"
#> [151] "TMe-579"  "TMe-2802" "TMe-86"   "TMe-1526" "TMe-1311" "TMe-569" 
#> [157] "TMe-3282" "TMe-609"  "TMe-645"  "TMe-2551" "TMe-3773" "TMe-2956"
#> [163] "TMe-665"  "TMe-2439" "TMe-481"  "TMe-289"  "TMe-1975" "TMe-487" 
#> [169] "TMe-3501" "TMe-2119" "TMe-826"  "TMe-362"  "TMe-410"  "TMe-3222"
#> [175] "TMe-1762" "TMe-1756" "TMe-1425" "TMe-2968" "TMe-431"  "TMe-3531"
#> [181] "TMe-2257" "TMe-1769" "TMe-2976" "TMe-404"  "TMe-618"  "TMe-154" 
#> [187] "TMe-750"  "TMe-1988" "TMe-1007" "TMe-1621" "TMe-2862" "TMe-510" 
#> [193] "TMe-2733" "TMe-35"   "TMe-1273" "TMe-394"  "TMe-3387" "TMe-601" 
#> [199] "TMe-1376" "TMe-3401" "TMe-3382" "TMe-2843" "TMe-745"  "TMe-925" 
#> [205] "TMe-751"  "TMe-3054" "TMe-1401" "TMe-2513" "TMe-47"   "TMe-3299"
#> [211] "TMe-4"    "TMe-3596" "TMe-1074" "TMe-1042" "TMe-365"  "TMe-2860"
#> [217] "TMe-550"  "TMe-1580" "TMe-589"  "TMe-148"  "TMe-2910" "TMe-1715"
#> [223] "TMe-1501" "TMe-3351" "TMe-3353" "TMe-2757" "TMe-1817" "TMe-3471"
#> [229] "TMe-209"  "TMe-1564" "TMe-2973" "TMe-298"  "TMe-6"    "TMe-2995"
#> [235] "TMe-3467" "TMe-400"  "TMe-363"  "TMe-606"  "TMe-1786" "TMe-251" 
#> [241] "TMe-3428" "TMe-93"   "TMe-248"  "TMe-737"  "TMe-3368" "TMe-3460"
#> [247] "TMe-3435" "TMe-3352" "TMe-241"  "TMe-66"   "TMe-3599" "TMe-3572"
#> [253] "TMe-3093" "TMe-3437" "TMe-1725" "TMe-1269" "TMe-1312" "TMe-3571"
#> [259] "TMe-976"  "TMe-893"  "TMe-2530" "TMe-7"    "TMe-3110" "TMe-3074"
#> [265] "TMe-3346" "TMe-85"   "TMe-1792" "TMe-836"  "TMe-3465" "TMe-2901"
#> [271] "TMe-501"  "TMe-196"  "TMe-876"  "TMe-3066" "TMe-777"  "TMe-3592"
#> [277] "TMe-3575" "TMe-2751" "TMe-886"  "TMe-475"  "TMe-23"   "TMe-3272"
#> [283] "TMe-2811" "TMe-3557" "TMe-2057" "TMe-1100" "TMe-3679" "TMe-2821"
#> [289] "TMe-3209" "TMe-174"  "TMe-360"  "TMe-1332" "TMe-2589" "TMe-1239"
#> [295] "TMe-1033" "TMe-2374" "TMe-304"  "TMe-2128" "TMe-3724" "TMe-1560"
#> [301] "TMe-312"  "TMe-3273" "TMe-3357" "TMe-3266" "TMe-3007" "TMe-208" 
#> [307] "TMe-1558" "TMe-1964" "TMe-656"  "TMe-698"  "TMe-500"  "TMe-2897"
#> [313] "TMe-64"   "TMe-2124" "TMe-3133" "TMe-2779" "TMe-1398" "TMe-699" 
#> [319] "TMe-845"  "TMe-1444" "TMe-3085" "TMe-3210" "TMe-3220" "TMe-2790"
#> [325] "TMe-716"  "TMe-3055" "TMe-2203" "TMe-526"  "TMe-2855" "TMe-78"  
#> [331] "TMe-70"   "TMe-2242" "TMe-3752" "TMe-5"    "TMe-3539" "TMe-343" 
#> [337] "TMe-1522"

# Fetch genotype names of core set by variance criterion
subset(x = out1, criterion = "variance")
#>   [1] "TMe-3163" "TMe-603"  "TMe-3685" "TMe-3605" "TMe-3292" "TMe-399" 
#>   [7] "TMe-3667" "TMe-3736" "TMe-3800" "TMe-3705" "TMe-616"  "TMe-2943"
#>  [13] "TMe-3573" "TMe-901"  "TMe-3628" "TMe-390"  "TMe-1730" "TMe-3730"
#>  [19] "TMe-2035" "TMe-3223" "TMe-2050" "TMe-2967" "TMe-812"  "TMe-608" 
#>  [25] "TMe-2853" "TMe-2996" "TMe-3694" "TMe-3701" "TMe-2983" "TMe-731" 
#>  [31] "TMe-2531" "TMe-707"  "TMe-412"  "TMe-717"  "TMe-761"  "TMe-1261"
#>  [37] "TMe-3415" "TMe-2963" "TMe-997"  "TMe-588"  "TMe-373"  "TMe-13"  
#>  [43] "TMe-798"  "TMe-1985" "TMe-861"  "TMe-3040" "TMe-2940" "TMe-1919"
#>  [49] "TMe-3089" "TMe-3581" "TMe-659"  "TMe-2043" "TMe-3392" "TMe-432" 
#>  [55] "TMe-3297" "TMe-705"  "TMe-623"  "TMe-929"  "TMe-1294" "TMe-1416"
#>  [61] "TMe-2955" "TMe-832"  "TMe-1307" "TMe-1646" "TMe-3319" "TMe-815" 
#>  [67] "TMe-427"  "TMe-3406" "TMe-3698" "TMe-728"  "TMe-2913" "TMe-421" 
#>  [73] "TMe-1283" "TMe-3641" "TMe-2204" "TMe-584"  "TMe-2196" "TMe-527" 
#>  [79] "TMe-1945" "TMe-863"  "TMe-3249" "TMe-3065" "TMe-27"   "TMe-694" 
#>  [85] "TMe-725"  "TMe-1011" "TMe-2966" "TMe-926"  "TMe-1472" "TMe-3130"
#>  [91] "TMe-3025" "TMe-3076" "TMe-2604" "TMe-700"  "TMe-1098" "TMe-994" 
#>  [97] "TMe-1272" "TMe-2937" "TMe-2952" "TMe-2916" "TMe-3565" "TMe-3396"
#> [103] "TMe-2329" "TMe-3659" "TMe-3601" "TMe-3281" "TMe-1158" "TMe-2040"
#> [109] "TMe-835"  "TMe-1339" "TMe-3475" "TMe-742"  "TMe-2151" "TMe-2984"
#> [115] "TMe-1958" "TMe-3034" "TMe-438"  "TMe-391"  "TMe-3485" "TMe-1137"
#> [121] "TMe-1286" "TMe-1248" "TMe-3398" "TMe-1079" "TMe-3087" "TMe-2518"
#> [127] "TMe-473"  "TMe-2914" "TMe-3639" "TMe-3363" "TMe-585"  "TMe-631" 
#> [133] "TMe-1806" "TMe-3329" "TMe-2441" "TMe-1129" "TMe-2226" "TMe-729" 
#> [139] "TMe-2905" "TMe-736"  "TMe-2906" "TMe-1300" "TMe-1723" "TMe-756" 
#> [145] "TMe-787"  "TMe-3633" "TMe-1124" "TMe-1101" "TMe-1388" "TMe-2688"
#> [151] "TMe-579"  "TMe-2802" "TMe-86"   "TMe-1526" "TMe-1311" "TMe-569" 
#> [157] "TMe-3282" "TMe-609"  "TMe-645"  "TMe-2551" "TMe-3773" "TMe-2956"
#> [163] "TMe-665"  "TMe-2439" "TMe-481"  "TMe-289"  "TMe-1975" "TMe-487" 
#> [169] "TMe-3501" "TMe-2119" "TMe-826"  "TMe-362"  "TMe-410"  "TMe-3222"
#> [175] "TMe-1762" "TMe-1756" "TMe-1425" "TMe-2968" "TMe-431"  "TMe-3531"
#> [181] "TMe-2257" "TMe-1769" "TMe-2976" "TMe-404"  "TMe-618"  "TMe-154" 
#> [187] "TMe-750"  "TMe-1988" "TMe-1007" "TMe-1621" "TMe-2862" "TMe-510" 
#> [193] "TMe-2733" "TMe-35"   "TMe-1273" "TMe-394"  "TMe-3387" "TMe-601" 
#> [199] "TMe-1376" "TMe-3401" "TMe-3382" "TMe-2843" "TMe-745"  "TMe-925" 
#> [205] "TMe-751"  "TMe-3054" "TMe-1401" "TMe-2513" "TMe-47"   "TMe-3299"
#> [211] "TMe-4"    "TMe-3596" "TMe-1074" "TMe-1042" "TMe-365"  "TMe-2860"
#> [217] "TMe-550"  "TMe-1580" "TMe-589"  "TMe-148"  "TMe-2910" "TMe-1715"
#> [223] "TMe-1501" "TMe-3351" "TMe-3353" "TMe-2757" "TMe-1817" "TMe-3471"
#> [229] "TMe-209"  "TMe-1564" "TMe-2973" "TMe-298"  "TMe-6"    "TMe-2995"
#> [235] "TMe-3467" "TMe-400"  "TMe-363"  "TMe-606"  "TMe-1786" "TMe-251" 
#> [241] "TMe-3428" "TMe-93"   "TMe-248"  "TMe-737"  "TMe-3368" "TMe-3460"
#> [247] "TMe-3435" "TMe-3352" "TMe-241"  "TMe-66"   "TMe-3599" "TMe-3572"
#> [253] "TMe-3093" "TMe-3437" "TMe-1725" "TMe-1269" "TMe-1312" "TMe-3571"
#> [259] "TMe-976"  "TMe-893"  "TMe-2530" "TMe-7"    "TMe-3110" "TMe-3074"
#> [265] "TMe-3346" "TMe-85"   "TMe-1792" "TMe-836"  "TMe-3465" "TMe-2901"
#> [271] "TMe-501"  "TMe-196"  "TMe-876"  "TMe-3066" "TMe-777"  "TMe-3592"
#> [277] "TMe-3575" "TMe-2751" "TMe-886"  "TMe-475"  "TMe-23"   "TMe-3272"
#> [283] "TMe-2811" "TMe-3557" "TMe-2057" "TMe-1100" "TMe-3679" "TMe-2821"
#> [289] "TMe-3209" "TMe-174"  "TMe-360"  "TMe-1332" "TMe-2589" "TMe-1239"
#> [295] "TMe-1033" "TMe-2374" "TMe-304"  "TMe-2128" "TMe-3724" "TMe-1560"
#> [301] "TMe-312"  "TMe-3273" "TMe-3357" "TMe-3266" "TMe-3007" "TMe-208" 
#> [307] "TMe-1558" "TMe-1964" "TMe-656"  "TMe-698"  "TMe-500"  "TMe-2897"
#> [313] "TMe-64"   "TMe-2124" "TMe-3133" "TMe-2779" "TMe-1398" "TMe-699" 
#> [319] "TMe-845"  "TMe-1444" "TMe-3085" "TMe-3210" "TMe-3220" "TMe-2790"
#> [325] "TMe-716"  "TMe-3055" "TMe-2203" "TMe-526"  "TMe-2855" "TMe-78"  
#> [331] "TMe-70"   "TMe-2242" "TMe-3752" "TMe-5"    "TMe-3539" "TMe-343" 
#> [337] "TMe-1522" "TMe-1199" "TMe-277"  "TMe-3326" "TMe-3707" "TMe-333" 
#> [343] "TMe-2814" "TMe-2567" "TMe-1830" "TMe-3433" "TMe-1198" "TMe-283" 
#> [349] "TMe-1553" "TMe-1091" "TMe-361"  "TMe-930"  "TMe-218"  "TMe-3296"
#> [355] "TMe-184"  "TMe-952"  "TMe-3548" "TMe-3533" "TMe-3140" "TMe-3207"
#> [361] "TMe-1532" "TMe-830"  "TMe-1616" "TMe-1533" "TMe-3479" "TMe-1397"
#> [367] "TMe-1006" "TMe-2010" "TMe-3766" "TMe-3101" "TMe-1257" "TMe-635" 
#> [373] "TMe-1160" "TMe-1442" "TMe-2998" "TMe-44"   "TMe-1814" "TMe-2413"
#> [379] "TMe-138"  "TMe-2425" "TMe-2271" "TMe-3234" "TMe-279"  "TMe-3480"
#> [385] "TMe-477"  "TMe-423"  "TMe-1694" "TMe-359"  "TMe-3478" "TMe-1256"
#> [391] "TMe-3127" "TMe-415"  "TMe-3443" "TMe-1366" "TMe-1886" "TMe-203" 
#> [397] "TMe-1551" "TMe-1341" "TMe-3466" "TMe-1577" "TMe-1891" "TMe-2891"
#> [403] "TMe-1796" "TMe-3455" "TMe-1067" "TMe-727"  "TMe-1847" "TMe-2809"
#> [409] "TMe-2915" "TMe-247"  "TMe-1267" "TMe-600"  "TMe-2568" "TMe-340" 
#> [415] "TMe-2917" "TMe-3721" "TMe-74"   "TMe-3362" "TMe-383"  "TMe-3185"
#> [421] "TMe-1078" "TMe-1765" "TMe-2361" "TMe-2981" "TMe-176"  "TMe-3115"
#> [427] "TMe-1250" "TMe-706"  "TMe-123"  "TMe-294"  "TMe-3071" "TMe-1505"
#> [433] "TMe-3366" "TMe-2890" "TMe-575"  "TMe-3551" "TMe-2191" "TMe-3518"
#> [439] "TMe-841"  "TMe-1568" "TMe-2304" "TMe-528"  "TMe-425"  "TMe-2753"
#> [445] "TMe-594"  "TMe-1293" "TMe-3230" "TMe-267"  "TMe-210"  "TMe-3642"
#> [451] "TMe-1547" "TMe-1348" "TMe-1512" "TMe-2195" "TMe-469"  "TMe-889" 
#> [457] "TMe-3545" "TMe-3030" "TMe-1204" "TMe-67"   "TMe-1107" "TMe-3434"
#> [463] "TMe-2355" "TMe-1579" "TMe-59"   "TMe-3252" "TMe-795"  "TMe-3591"
#> [469] "TMe-1485" "TMe-2158" "TMe-2060" "TMe-2776" "TMe-3772" "TMe-1480"
#> [475] "TMe-3558" "TMe-428"  "TMe-3169" "TMe-675"  "TMe-2307" "TMe-842" 
#> [481] "TMe-3663" "TMe-2797" "TMe-3043" "TMe-2765" "TMe-3200" "TMe-3004"
#> [487] "TMe-276"  "TMe-2056" "TMe-794"  "TMe-3514" "TMe-2970" "TMe-1184"
#> [493] "TMe-1053" "TMe-3354" "TMe-634"  "TMe-1483" "TMe-237"  "TMe-3324"
#> [499] "TMe-1581" "TMe-2510" "TMe-2944" "TMe-170"  "TMe-1622" "TMe-2356"
#> [505] "TMe-3216" "TMe-306"  "TMe-259"  "TMe-875"  "TMe-3440" "TMe-1094"
#> [511] "TMe-3438" "TMe-34"   "TMe-801"  "TMe-1716" "TMe-651"  "TMe-1406"
#> [517] "TMe-274"  "TMe-1421" "TMe-3218" "TMe-1342" "TMe-1420" "TMe-1732"
#> [523] "TMe-2748" "TMe-2839" "TMe-160"  "TMe-1790" "TMe-513"  "TMe-30"  
#> [529] "TMe-2824" "TMe-2997" "TMe-1518" "TMe-2572"

# Fetch genotype names of core set by logistic regression criterion
subset(x = out1, criterion = "logistic")
#>   [1] "TMe-3163" "TMe-603"  "TMe-3685" "TMe-3605" "TMe-3292" "TMe-399" 
#>   [7] "TMe-3667" "TMe-3736" "TMe-3800" "TMe-3705" "TMe-616"  "TMe-2943"
#>  [13] "TMe-3573" "TMe-901"  "TMe-3628" "TMe-390"  "TMe-1730" "TMe-3730"
#>  [19] "TMe-2035" "TMe-3223" "TMe-2050" "TMe-2967" "TMe-812"  "TMe-608" 
#>  [25] "TMe-2853" "TMe-2996" "TMe-3694" "TMe-3701" "TMe-2983" "TMe-731" 
#>  [31] "TMe-2531" "TMe-707"  "TMe-412"  "TMe-717"  "TMe-761"  "TMe-1261"
#>  [37] "TMe-3415" "TMe-2963" "TMe-997"  "TMe-588"  "TMe-373"  "TMe-13"  
#>  [43] "TMe-798"  "TMe-1985" "TMe-861"  "TMe-3040" "TMe-2940" "TMe-1919"
#>  [49] "TMe-3089" "TMe-3581" "TMe-659"  "TMe-2043" "TMe-3392" "TMe-432" 
#>  [55] "TMe-3297" "TMe-705"  "TMe-623"  "TMe-929"  "TMe-1294" "TMe-1416"
#>  [61] "TMe-2955" "TMe-832"  "TMe-1307" "TMe-1646" "TMe-3319" "TMe-815" 
#>  [67] "TMe-427"  "TMe-3406" "TMe-3698" "TMe-728"  "TMe-2913" "TMe-421" 
#>  [73] "TMe-1283" "TMe-3641" "TMe-2204" "TMe-584"  "TMe-2196" "TMe-527" 
#>  [79] "TMe-1945" "TMe-863"  "TMe-3249" "TMe-3065" "TMe-27"   "TMe-694" 
#>  [85] "TMe-725"  "TMe-1011" "TMe-2966" "TMe-926"  "TMe-1472" "TMe-3130"
#>  [91] "TMe-3025" "TMe-3076" "TMe-2604" "TMe-700"  "TMe-1098" "TMe-994" 
#>  [97] "TMe-1272" "TMe-2937" "TMe-2952" "TMe-2916" "TMe-3565" "TMe-3396"
#> [103] "TMe-2329" "TMe-3659" "TMe-3601" "TMe-3281" "TMe-1158" "TMe-2040"
#> [109] "TMe-835"  "TMe-1339" "TMe-3475" "TMe-742"  "TMe-2151" "TMe-2984"
#> [115] "TMe-1958" "TMe-3034" "TMe-438"  "TMe-391"  "TMe-3485" "TMe-1137"
#> [121] "TMe-1286" "TMe-1248" "TMe-3398" "TMe-1079" "TMe-3087" "TMe-2518"
#> [127] "TMe-473"  "TMe-2914" "TMe-3639" "TMe-3363" "TMe-585"  "TMe-631" 
#> [133] "TMe-1806" "TMe-3329" "TMe-2441" "TMe-1129" "TMe-2226" "TMe-729" 
#> [139] "TMe-2905" "TMe-736"  "TMe-2906" "TMe-1300" "TMe-1723" "TMe-756" 
#> [145] "TMe-787"  "TMe-3633" "TMe-1124" "TMe-1101" "TMe-1388" "TMe-2688"
#> [151] "TMe-579"  "TMe-2802" "TMe-86"   "TMe-1526" "TMe-1311" "TMe-569" 
#> [157] "TMe-3282" "TMe-609"  "TMe-645"  "TMe-2551" "TMe-3773" "TMe-2956"
#> [163] "TMe-665"  "TMe-2439" "TMe-481"  "TMe-289"  "TMe-1975" "TMe-487" 
#> [169] "TMe-3501" "TMe-2119" "TMe-826"  "TMe-362"  "TMe-410"  "TMe-3222"
#> [175] "TMe-1762" "TMe-1756" "TMe-1425" "TMe-2968" "TMe-431"  "TMe-3531"
#> [181] "TMe-2257" "TMe-1769" "TMe-2976" "TMe-404"  "TMe-618"  "TMe-154" 
#> [187] "TMe-750"  "TMe-1988" "TMe-1007"

#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# Get core sets with PCSS (qualitative data)
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

out2 <- pcss.core(data = data, names = "Genotypes", quantitative = NULL,
                  qualitative = qual, eigen.threshold = NULL,
                  size = 0.2, var.threshold = 0.75)

# Core sets
out2$cores.info
#>                   Method Size   VarRet
#> 1      By size specified  337 51.05444
#> 2  By threshold variance  822 75.00000
#> 3 By logistic regression  322 50.00157

# Fetch genotype names of core set by size criterion
subset(x = out2, criterion = "size")
#>   [1] "TMe-1004" "TMe-2953" "TMe-2010" "TMe-1020" "TMe-1511" "TMe-1174"
#>   [7] "TMe-35"   "TMe-1461" "TMe-3054" "TMe-963"  "TMe-2567" "TMe-867" 
#>  [13] "TMe-3222" "TMe-3428" "TMe-5"    "TMe-2304" "TMe-937"  "TMe-1875"
#>  [19] "TMe-2985" "TMe-696"  "TMe-1124" "TMe-3396" "TMe-2853" "TMe-606" 
#>  [25] "TMe-2033" "TMe-3255" "TMe-1232" "TMe-2996" "TMe-3112" "TMe-3026"
#>  [31] "TMe-1796" "TMe-41"   "TMe-2355" "TMe-3095" "TMe-3736" "TMe-1025"
#>  [37] "TMe-3252" "TMe-2993" "TMe-2967" "TMe-3282" "TMe-1769" "TMe-289" 
#>  [43] "TMe-3281" "TMe-3466" "TMe-241"  "TMe-3266" "TMe-3330" "TMe-3264"
#>  [49] "TMe-3249" "TMe-3262" "TMe-3493" "TMe-1042" "TMe-3690" "TMe-514" 
#>  [55] "TMe-856"  "TMe-2064" "TMe-2809" "TMe-3475" "TMe-1661" "TMe-1995"
#>  [61] "TMe-3272" "TMe-465"  "TMe-3319" "TMe-2534" "TMe-3549" "TMe-1053"
#>  [67] "TMe-3323" "TMe-2980" "TMe-2069" "TMe-2604" "TMe-2981" "TMe-3140"
#>  [73] "TMe-3223" "TMe-1633" "TMe-969"  "TMe-3116" "TMe-457"  "TMe-3389"
#>  [79] "TMe-2083" "TMe-225"  "TMe-160"  "TMe-2413" "TMe-1403" "TMe-751" 
#>  [85] "TMe-3141" "TMe-2906" "TMe-2971" "TMe-1416" "TMe-2439" "TMe-2890"
#>  [91] "TMe-3030" "TMe-1164" "TMe-698"  "TMe-3398" "TMe-3387" "TMe-551" 
#>  [97] "TMe-1428" "TMe-1392" "TMe-267"  "TMe-1988" "TMe-3065" "TMe-3392"
#> [103] "TMe-3730" "TMe-3115" "TMe-1026" "TMe-3766" "TMe-3185" "TMe-185" 
#> [109] "TMe-756"  "TMe-2172" "TMe-1814" "TMe-154"  "TMe-1564" "TMe-761" 
#> [115] "TMe-3394" "TMe-2352" "TMe-956"  "TMe-3046" "TMe-1985" "TMe-540" 
#> [121] "TMe-985"  "TMe-656"  "TMe-3771" "TMe-1723" "TMe-2785" "TMe-1158"
#> [127] "TMe-1992" "TMe-1074" "TMe-266"  "TMe-2308" "TMe-138"  "TMe-2957"
#> [133] "TMe-2195" "TMe-1579" "TMe-2004" "TMe-1518" "TMe-3253" "TMe-1608"
#> [139] "TMe-2196" "TMe-936"  "TMe-480"  "TMe-1600" "TMe-1506" "TMe-2018"
#> [145] "TMe-1266" "TMe-650"  "TMe-1239" "TMe-3088" "TMe-3111" "TMe-2045"
#> [151] "TMe-3299" "TMe-1383" "TMe-3422" "TMe-44"   "TMe-2756" "TMe-3200"
#> [157] "TMe-3663" "TMe-3478" "TMe-3437" "TMe-3605" "TMe-2907" "TMe-3445"
#> [163] "TMe-1775" "TMe-1809" "TMe-1902" "TMe-3596" "TMe-3055" "TMe-3225"
#> [169] "TMe-3805" "TMe-620"  "TMe-38"   "TMe-2031" "TMe-2913" "TMe-2914"
#> [175] "TMe-2510" "TMe-2975" "TMe-1960" "TMe-3760" "TMe-3276" "TMe-2551"
#> [181] "TMe-1425" "TMe-2916" "TMe-3314" "TMe-43"   "TMe-3277" "TMe-25"  
#> [187] "TMe-2934" "TMe-3401" "TMe-1744" "TMe-3568" "TMe-2901" "TMe-3544"
#> [193] "TMe-754"  "TMe-3143" "TMe-2810" "TMe-3274" "TMe-3485" "TMe-2955"
#> [199] "TMe-536"  "TMe-3128" "TMe-3345" "TMe-3594" "TMe-378"  "TMe-3383"
#> [205] "TMe-712"  "TMe-2041" "TMe-2912" "TMe-3628" "TMe-2217" "TMe-3707"
#> [211] "TMe-2216" "TMe-2965" "TMe-1283" "TMe-3715" "TMe-3631" "TMe-3721"
#> [217] "TMe-215"  "TMe-1226" "TMe-3480" "TMe-397"  "TMe-181"  "TMe-420" 
#> [223] "TMe-280"  "TMe-1734" "TMe-619"  "TMe-3572" "TMe-3547" "TMe-3719"
#> [229] "TMe-1479" "TMe-3397" "TMe-2860" "TMe-34"   "TMe-3234" "TMe-1218"
#> [235] "TMe-3458" "TMe-3051" "TMe-778"  "TMe-1241" "TMe-352"  "TMe-1360"
#> [241] "TMe-737"  "TMe-3638" "TMe-276"  "TMe-434"  "TMe-132"  "TMe-3167"
#> [247] "TMe-509"  "TMe-3275" "TMe-774"  "TMe-1250" "TMe-3599" "TMe-2897"
#> [253] "TMe-226"  "TMe-1700" "TMe-3576" "TMe-259"  "TMe-812"  "TMe-3312"
#> [259] "TMe-1935" "TMe-74"   "TMe-15"   "TMe-190"  "TMe-3359" "TMe-3625"
#> [265] "TMe-39"   "TMe-1301" "TMe-2791" "TMe-3238" "TMe-1566" "TMe-3619"
#> [271] "TMe-2572" "TMe-1353" "TMe-2811" "TMe-1162" "TMe-3027" "TMe-3440"
#> [277] "TMe-1434" "TMe-3481" "TMe-3198" "TMe-663"  "TMe-2979" "TMe-2237"
#> [283] "TMe-270"  "TMe-3256" "TMe-853"  "TMe-1738" "TMe-362"  "TMe-3758"
#> [289] "TMe-1401" "TMe-3278" "TMe-1916" "TMe-234"  "TMe-261"  "TMe-950" 
#> [295] "TMe-635"  "TMe-184"  "TMe-277"  "TMe-107"  "TMe-28"   "TMe-1883"
#> [301] "TMe-268"  "TMe-279"  "TMe-27"   "TMe-1099" "TMe-2688" "TMe-2779"
#> [307] "TMe-3545" "TMe-2058" "TMe-1897" "TMe-116"  "TMe-1265" "TMe-40"  
#> [313] "TMe-2866" "TMe-186"  "TMe-130"  "TMe-773"  "TMe-72"   "TMe-3418"
#> [319] "TMe-725"  "TMe-123"  "TMe-2835" "TMe-3325" "TMe-3575" "TMe-3017"
#> [325] "TMe-878"  "TMe-1302" "TMe-167"  "TMe-3273" "TMe-372"  "TMe-2374"
#> [331] "TMe-759"  "TMe-103"  "TMe-205"  "TMe-82"   "TMe-442"  "TMe-745" 
#> [337] "TMe-330" 

# Fetch genotype names of core set by variance criterion
subset(x = out2, criterion = "variance")
#>   [1] "TMe-1004" "TMe-2953" "TMe-2010" "TMe-1020" "TMe-1511" "TMe-1174"
#>   [7] "TMe-35"   "TMe-1461" "TMe-3054" "TMe-963"  "TMe-2567" "TMe-867" 
#>  [13] "TMe-3222" "TMe-3428" "TMe-5"    "TMe-2304" "TMe-937"  "TMe-1875"
#>  [19] "TMe-2985" "TMe-696"  "TMe-1124" "TMe-3396" "TMe-2853" "TMe-606" 
#>  [25] "TMe-2033" "TMe-3255" "TMe-1232" "TMe-2996" "TMe-3112" "TMe-3026"
#>  [31] "TMe-1796" "TMe-41"   "TMe-2355" "TMe-3095" "TMe-3736" "TMe-1025"
#>  [37] "TMe-3252" "TMe-2993" "TMe-2967" "TMe-3282" "TMe-1769" "TMe-289" 
#>  [43] "TMe-3281" "TMe-3466" "TMe-241"  "TMe-3266" "TMe-3330" "TMe-3264"
#>  [49] "TMe-3249" "TMe-3262" "TMe-3493" "TMe-1042" "TMe-3690" "TMe-514" 
#>  [55] "TMe-856"  "TMe-2064" "TMe-2809" "TMe-3475" "TMe-1661" "TMe-1995"
#>  [61] "TMe-3272" "TMe-465"  "TMe-3319" "TMe-2534" "TMe-3549" "TMe-1053"
#>  [67] "TMe-3323" "TMe-2980" "TMe-2069" "TMe-2604" "TMe-2981" "TMe-3140"
#>  [73] "TMe-3223" "TMe-1633" "TMe-969"  "TMe-3116" "TMe-457"  "TMe-3389"
#>  [79] "TMe-2083" "TMe-225"  "TMe-160"  "TMe-2413" "TMe-1403" "TMe-751" 
#>  [85] "TMe-3141" "TMe-2906" "TMe-2971" "TMe-1416" "TMe-2439" "TMe-2890"
#>  [91] "TMe-3030" "TMe-1164" "TMe-698"  "TMe-3398" "TMe-3387" "TMe-551" 
#>  [97] "TMe-1428" "TMe-1392" "TMe-267"  "TMe-1988" "TMe-3065" "TMe-3392"
#> [103] "TMe-3730" "TMe-3115" "TMe-1026" "TMe-3766" "TMe-3185" "TMe-185" 
#> [109] "TMe-756"  "TMe-2172" "TMe-1814" "TMe-154"  "TMe-1564" "TMe-761" 
#> [115] "TMe-3394" "TMe-2352" "TMe-956"  "TMe-3046" "TMe-1985" "TMe-540" 
#> [121] "TMe-985"  "TMe-656"  "TMe-3771" "TMe-1723" "TMe-2785" "TMe-1158"
#> [127] "TMe-1992" "TMe-1074" "TMe-266"  "TMe-2308" "TMe-138"  "TMe-2957"
#> [133] "TMe-2195" "TMe-1579" "TMe-2004" "TMe-1518" "TMe-3253" "TMe-1608"
#> [139] "TMe-2196" "TMe-936"  "TMe-480"  "TMe-1600" "TMe-1506" "TMe-2018"
#> [145] "TMe-1266" "TMe-650"  "TMe-1239" "TMe-3088" "TMe-3111" "TMe-2045"
#> [151] "TMe-3299" "TMe-1383" "TMe-3422" "TMe-44"   "TMe-2756" "TMe-3200"
#> [157] "TMe-3663" "TMe-3478" "TMe-3437" "TMe-3605" "TMe-2907" "TMe-3445"
#> [163] "TMe-1775" "TMe-1809" "TMe-1902" "TMe-3596" "TMe-3055" "TMe-3225"
#> [169] "TMe-3805" "TMe-620"  "TMe-38"   "TMe-2031" "TMe-2913" "TMe-2914"
#> [175] "TMe-2510" "TMe-2975" "TMe-1960" "TMe-3760" "TMe-3276" "TMe-2551"
#> [181] "TMe-1425" "TMe-2916" "TMe-3314" "TMe-43"   "TMe-3277" "TMe-25"  
#> [187] "TMe-2934" "TMe-3401" "TMe-1744" "TMe-3568" "TMe-2901" "TMe-3544"
#> [193] "TMe-754"  "TMe-3143" "TMe-2810" "TMe-3274" "TMe-3485" "TMe-2955"
#> [199] "TMe-536"  "TMe-3128" "TMe-3345" "TMe-3594" "TMe-378"  "TMe-3383"
#> [205] "TMe-712"  "TMe-2041" "TMe-2912" "TMe-3628" "TMe-2217" "TMe-3707"
#> [211] "TMe-2216" "TMe-2965" "TMe-1283" "TMe-3715" "TMe-3631" "TMe-3721"
#> [217] "TMe-215"  "TMe-1226" "TMe-3480" "TMe-397"  "TMe-181"  "TMe-420" 
#> [223] "TMe-280"  "TMe-1734" "TMe-619"  "TMe-3572" "TMe-3547" "TMe-3719"
#> [229] "TMe-1479" "TMe-3397" "TMe-2860" "TMe-34"   "TMe-3234" "TMe-1218"
#> [235] "TMe-3458" "TMe-3051" "TMe-778"  "TMe-1241" "TMe-352"  "TMe-1360"
#> [241] "TMe-737"  "TMe-3638" "TMe-276"  "TMe-434"  "TMe-132"  "TMe-3167"
#> [247] "TMe-509"  "TMe-3275" "TMe-774"  "TMe-1250" "TMe-3599" "TMe-2897"
#> [253] "TMe-226"  "TMe-1700" "TMe-3576" "TMe-259"  "TMe-812"  "TMe-3312"
#> [259] "TMe-1935" "TMe-74"   "TMe-15"   "TMe-190"  "TMe-3359" "TMe-3625"
#> [265] "TMe-39"   "TMe-1301" "TMe-2791" "TMe-3238" "TMe-1566" "TMe-3619"
#> [271] "TMe-2572" "TMe-1353" "TMe-2811" "TMe-1162" "TMe-3027" "TMe-3440"
#> [277] "TMe-1434" "TMe-3481" "TMe-3198" "TMe-663"  "TMe-2979" "TMe-2237"
#> [283] "TMe-270"  "TMe-3256" "TMe-853"  "TMe-1738" "TMe-362"  "TMe-3758"
#> [289] "TMe-1401" "TMe-3278" "TMe-1916" "TMe-234"  "TMe-261"  "TMe-950" 
#> [295] "TMe-635"  "TMe-184"  "TMe-277"  "TMe-107"  "TMe-28"   "TMe-1883"
#> [301] "TMe-268"  "TMe-279"  "TMe-27"   "TMe-1099" "TMe-2688" "TMe-2779"
#> [307] "TMe-3545" "TMe-2058" "TMe-1897" "TMe-116"  "TMe-1265" "TMe-40"  
#> [313] "TMe-2866" "TMe-186"  "TMe-130"  "TMe-773"  "TMe-72"   "TMe-3418"
#> [319] "TMe-725"  "TMe-123"  "TMe-2835" "TMe-3325" "TMe-3575" "TMe-3017"
#> [325] "TMe-878"  "TMe-1302" "TMe-167"  "TMe-3273" "TMe-372"  "TMe-2374"
#> [331] "TMe-759"  "TMe-103"  "TMe-205"  "TMe-82"   "TMe-442"  "TMe-745" 
#> [337] "TMe-330"  "TMe-3332" "TMe-2383" "TMe-3804" "TMe-768"  "TMe-755" 
#> [343] "TMe-381"  "TMe-3204" "TMe-3032" "TMe-2531" "TMe-1915" "TMe-460" 
#> [349] "TMe-1299" "TMe-3034" "TMe-3463" "TMe-2769" "TMe-3542" "TMe-3729"
#> [355] "TMe-1220" "TMe-815"  "TMe-3641" "TMe-3685" "TMe-3498" "TMe-1083"
#> [361] "TMe-2988" "TMe-3292" "TMe-771"  "TMe-1904" "TMe-575"  "TMe-208" 
#> [367] "TMe-3535" "TMe-63"   "TMe-425"  "TMe-2530" "TMe-1919" "TMe-85"  
#> [373] "TMe-427"  "TMe-3433" "TMe-3727" "TMe-1964" "TMe-86"   "TMe-693" 
#> [379] "TMe-3701" "TMe-2462" "TMe-2398" "TMe-748"  "TMe-1539" "TMe-2025"
#> [385] "TMe-1651" "TMe-2"    "TMe-1359" "TMe-3053" "TMe-3337" "TMe-766" 
#> [391] "TMe-209"  "TMe-33"   "TMe-2121" "TMe-948"  "TMe-1009" "TMe-1423"
#> [397] "TMe-3726" "TMe-945"  "TMe-217"  "TMe-3705" "TMe-3114" "TMe-1305"
#> [403] "TMe-18"   "TMe-3356" "TMe-798"  "TMe-2131" "TMe-3211" "TMe-1534"
#> [409] "TMe-3002" "TMe-1419" "TMe-70"   "TMe-2027" "TMe-747"  "TMe-2296"
#> [415] "TMe-4"    "TMe-334"  "TMe-3452" "TMe-3467" "TMe-2903" "TMe-3558"
#> [421] "TMe-2532" "TMe-2077" "TMe-822"  "TMe-1420" "TMe-1987" "TMe-2050"
#> [427] "TMe-3606" "TMe-3521" "TMe-410"  "TMe-3006" "TMe-1238" "TMe-1776"
#> [433] "TMe-3087" "TMe-1907" "TMe-764"  "TMe-3353" "TMe-3297" "TMe-2128"
#> [439] "TMe-1285" "TMe-306"  "TMe-3386" "TMe-1137" "TMe-3378" "TMe-3698"
#> [445] "TMe-3411" "TMe-2863" "TMe-2833" "TMe-3210" "TMe-3316" "TMe-3071"
#> [451] "TMe-2060" "TMe-2911" "TMe-3302" "TMe-3148" "TMe-1096" "TMe-723" 
#> [457] "TMe-2790" "TMe-596"  "TMe-1204" "TMe-1076" "TMe-3382" "TMe-830" 
#> [463] "TMe-2998" "TMe-828"  "TMe-660"  "TMe-972"  "TMe-2319" "TMe-2824"
#> [469] "TMe-2733" "TMe-1444" "TMe-3151" "TMe-1178" "TMe-1890" "TMe-3219"
#> [475] "TMe-842"  "TMe-821"  "TMe-2751" "TMe-3424" "TMe-7"    "TMe-1150"
#> [481] "TMe-385"  "TMe-2518" "TMe-3089" "TMe-477"  "TMe-2204" "TMe-3267"
#> [487] "TMe-1756" "TMe-93"   "TMe-3451" "TMe-290"  "TMe-816"  "TMe-1300"
#> [493] "TMe-3417" "TMe-2945" "TMe-1507" "TMe-2922" "TMe-3230" "TMe-383" 
#> [499] "TMe-1375" "TMe-2213" "TMe-1554" "TMe-1575" "TMe-2372" "TMe-391" 
#> [505] "TMe-2820" "TMe-3633" "TMe-674"  "TMe-2205" "TMe-690"  "TMe-3284"
#> [511] "TMe-3608" "TMe-1366" "TMe-2958" "TMe-3236" "TMe-1381" "TMe-2977"
#> [517] "TMe-3025" "TMe-1294" "TMe-1459" "TMe-3045" "TMe-1385" "TMe-3571"
#> [523] "TMe-2947" "TMe-2441" "TMe-2361" "TMe-3261" "TMe-2332" "TMe-735" 
#> [529] "TMe-1863" "TMe-893"  "TMe-1787" "TMe-180"  "TMe-1347" "TMe-1819"
#> [535] "TMe-2066" "TMe-48"   "TMe-3021" "TMe-1468" "TMe-1078" "TMe-1922"
#> [541] "TMe-2927" "TMe-2435" "TMe-12"   "TMe-1614" "TMe-3144" "TMe-925" 
#> [547] "TMe-885"  "TMe-3118" "TMe-2026" "TMe-188"  "TMe-419"  "TMe-3220"
#> [553] "TMe-2552" "TMe-1273" "TMe-2910" "TMe-1431" "TMe-2973" "TMe-819" 
#> [559] "TMe-791"  "TMe-1307" "TMe-299"  "TMe-3592" "TMe-3229" "TMe-2968"
#> [565] "TMe-2000" "TMe-675"  "TMe-3533" "TMe-340"  "TMe-189"  "TMe-3043"
#> [571] "TMe-150"  "TMe-1171" "TMe-3132" "TMe-3434" "TMe-594"  "TMe-2843"
#> [577] "TMe-2959" "TMe-1160" "TMe-3569" "TMe-3443" "TMe-142"  "TMe-1680"
#> [583] "TMe-3133" "TMe-3416" "TMe-673"  "TMe-2952" "TMe-1390" "TMe-2807"
#> [589] "TMe-1556" "TMe-3020" "TMe-2192" "TMe-3530" "TMe-3169" "TMe-1732"
#> [595] "TMe-3465" "TMe-1339" "TMe-1248" "TMe-3166" "TMe-1399" "TMe-155" 
#> [601] "TMe-405"  "TMe-2823" "TMe-1646" "TMe-797"  "TMe-2388" "TMe-3591"
#> [607] "TMe-876"  "TMe-1766" "TMe-3537" "TMe-2410" "TMe-3007" "TMe-3659"
#> [613] "TMe-360"  "TMe-1427" "TMe-99"   "TMe-3409" "TMe-2211" "TMe-1332"
#> [619] "TMe-3490" "TMe-1262" "TMe-1871" "TMe-3357" "TMe-617"  "TMe-3750"
#> [625] "TMe-3028" "TMe-13"   "TMe-2926" "TMe-886"  "TMe-2776" "TMe-104" 
#> [631] "TMe-2200" "TMe-2995" "TMe-1196" "TMe-3724" "TMe-1521" "TMe-528" 
#> [637] "TMe-727"  "TMe-3208" "TMe-1836" "TMe-304"  "TMe-3209" "TMe-976" 
#> [643] "TMe-1405" "TMe-1148" "TMe-717"  "TMe-3346" "TMe-3084" "TMe-1388"
#> [649] "TMe-1062" "TMe-14"   "TMe-2240" "TMe-1900" "TMe-6"    "TMe-946" 
#> [655] "TMe-1011" "TMe-3590" "TMe-3376" "TMe-897"  "TMe-3781" "TMe-3189"
#> [661] "TMe-478"  "TMe-3800" "TMe-3085" "TMe-1580" "TMe-3484" "TMe-2748"
#> [667] "TMe-1256" "TMe-838"  "TMe-3145" "TMe-1484" "TMe-2329" "TMe-707" 
#> [673] "TMe-1716" "TMe-1443" "TMe-2956" "TMe-3539" "TMe-975"  "TMe-930" 
#> [679] "TMe-655"  "TMe-3415" "TMe-1668" "TMe-307"  "TMe-3538" "TMe-777" 
#> [685] "TMe-1725" "TMe-1762" "TMe-826"  "TMe-64"   "TMe-589"  "TMe-3052"
#> [691] "TMe-3066" "TMe-1312" "TMe-2814" "TMe-3127" "TMe-1144" "TMe-3371"
#> [697] "TMe-3772" "TMe-1398" "TMe-3598" "TMe-204"  "TMe-3354" "TMe-2535"
#> [703] "TMe-2226" "TMe-556"  "TMe-3461" "TMe-1901" "TMe-1391" "TMe-954" 
#> [709] "TMe-1864" "TMe-1411" "TMe-3471" "TMe-3329" "TMe-245"  "TMe-648" 
#> [715] "TMe-3031" "TMe-59"   "TMe-1293" "TMe-2242" "TMe-1838" "TMe-1482"
#> [721] "TMe-550"  "TMe-399"  "TMe-2119" "TMe-90"   "TMe-592"  "TMe-312" 
#> [727] "TMe-667"  "TMe-3242" "TMe-3667" "TMe-3447" "TMe-275"  "TMe-3338"
#> [733] "TMe-394"  "TMe-2285" "TMe-3068" "TMe-1325" "TMe-600"  "TMe-1215"
#> [739] "TMe-407"  "TMe-200"  "TMe-1833" "TMe-2251" "TMe-919"  "TMe-884" 
#> [745] "TMe-2954" "TMe-796"  "TMe-3322" "TMe-203"  "TMe-2800" "TMe-2458"
#> [751] "TMe-1505" "TMe-1817" "TMe-892"  "TMe-3019" "TMe-1409" "TMe-3761"
#> [757] "TMe-2158" "TMe-211"  "TMe-1227" "TMe-2568" "TMe-1481" "TMe-1251"
#> [763] "TMe-3324" "TMe-1621" "TMe-2138" "TMe-714"  "TMe-2611" "TMe-196" 
#> [769] "TMe-3073" "TMe-3321" "TMe-1147" "TMe-1231" "TMe-3462" "TMe-2944"
#> [775] "TMe-834"  "TMe-1051" "TMe-3069" "TMe-3593" "TMe-2502" "TMe-817" 
#> [781] "TMe-3643" "TMe-995"  "TMe-3094" "TMe-903"  "TMe-1286" "TMe-2167"
#> [787] "TMe-3269" "TMe-3602" "TMe-53"   "TMe-1100" "TMe-1166" "TMe-3340"
#> [793] "TMe-1858" "TMe-982"  "TMe-281"  "TMe-3239" "TMe-1788" "TMe-3147"
#> [799] "TMe-3248" "TMe-1652" "TMe-2802" "TMe-3029" "TMe-1965" "TMe-3257"
#> [805] "TMe-1156" "TMe-669"  "TMe-1832" "TMe-645"  "TMe-997"  "TMe-1622"
#> [811] "TMe-2935" "TMe-237"  "TMe-3191" "TMe-794"  "TMe-513"  "TMe-2936"
#> [817] "TMe-365"  "TMe-2247" "TMe-1139" "TMe-3207" "TMe-348"  "TMe-1489"

# Fetch genotype names of core set by logistic regression criterion
subset(x = out2, criterion = "logistic")
#>   [1] "TMe-1004" "TMe-2953" "TMe-2010" "TMe-1020" "TMe-1511" "TMe-1174"
#>   [7] "TMe-35"   "TMe-1461" "TMe-3054" "TMe-963"  "TMe-2567" "TMe-867" 
#>  [13] "TMe-3222" "TMe-3428" "TMe-5"    "TMe-2304" "TMe-937"  "TMe-1875"
#>  [19] "TMe-2985" "TMe-696"  "TMe-1124" "TMe-3396" "TMe-2853" "TMe-606" 
#>  [25] "TMe-2033" "TMe-3255" "TMe-1232" "TMe-2996" "TMe-3112" "TMe-3026"
#>  [31] "TMe-1796" "TMe-41"   "TMe-2355" "TMe-3095" "TMe-3736" "TMe-1025"
#>  [37] "TMe-3252" "TMe-2993" "TMe-2967" "TMe-3282" "TMe-1769" "TMe-289" 
#>  [43] "TMe-3281" "TMe-3466" "TMe-241"  "TMe-3266" "TMe-3330" "TMe-3264"
#>  [49] "TMe-3249" "TMe-3262" "TMe-3493" "TMe-1042" "TMe-3690" "TMe-514" 
#>  [55] "TMe-856"  "TMe-2064" "TMe-2809" "TMe-3475" "TMe-1661" "TMe-1995"
#>  [61] "TMe-3272" "TMe-465"  "TMe-3319" "TMe-2534" "TMe-3549" "TMe-1053"
#>  [67] "TMe-3323" "TMe-2980" "TMe-2069" "TMe-2604" "TMe-2981" "TMe-3140"
#>  [73] "TMe-3223" "TMe-1633" "TMe-969"  "TMe-3116" "TMe-457"  "TMe-3389"
#>  [79] "TMe-2083" "TMe-225"  "TMe-160"  "TMe-2413" "TMe-1403" "TMe-751" 
#>  [85] "TMe-3141" "TMe-2906" "TMe-2971" "TMe-1416" "TMe-2439" "TMe-2890"
#>  [91] "TMe-3030" "TMe-1164" "TMe-698"  "TMe-3398" "TMe-3387" "TMe-551" 
#>  [97] "TMe-1428" "TMe-1392" "TMe-267"  "TMe-1988" "TMe-3065" "TMe-3392"
#> [103] "TMe-3730" "TMe-3115" "TMe-1026" "TMe-3766" "TMe-3185" "TMe-185" 
#> [109] "TMe-756"  "TMe-2172" "TMe-1814" "TMe-154"  "TMe-1564" "TMe-761" 
#> [115] "TMe-3394" "TMe-2352" "TMe-956"  "TMe-3046" "TMe-1985" "TMe-540" 
#> [121] "TMe-985"  "TMe-656"  "TMe-3771" "TMe-1723" "TMe-2785" "TMe-1158"
#> [127] "TMe-1992" "TMe-1074" "TMe-266"  "TMe-2308" "TMe-138"  "TMe-2957"
#> [133] "TMe-2195" "TMe-1579" "TMe-2004" "TMe-1518" "TMe-3253" "TMe-1608"
#> [139] "TMe-2196" "TMe-936"  "TMe-480"  "TMe-1600" "TMe-1506" "TMe-2018"
#> [145] "TMe-1266" "TMe-650"  "TMe-1239" "TMe-3088" "TMe-3111" "TMe-2045"
#> [151] "TMe-3299" "TMe-1383" "TMe-3422" "TMe-44"   "TMe-2756" "TMe-3200"
#> [157] "TMe-3663" "TMe-3478" "TMe-3437" "TMe-3605" "TMe-2907" "TMe-3445"
#> [163] "TMe-1775" "TMe-1809" "TMe-1902" "TMe-3596" "TMe-3055" "TMe-3225"
#> [169] "TMe-3805" "TMe-620"  "TMe-38"   "TMe-2031" "TMe-2913" "TMe-2914"
#> [175] "TMe-2510" "TMe-2975" "TMe-1960" "TMe-3760" "TMe-3276" "TMe-2551"
#> [181] "TMe-1425" "TMe-2916" "TMe-3314" "TMe-43"   "TMe-3277" "TMe-25"  
#> [187] "TMe-2934" "TMe-3401" "TMe-1744" "TMe-3568" "TMe-2901" "TMe-3544"
#> [193] "TMe-754"  "TMe-3143" "TMe-2810" "TMe-3274" "TMe-3485" "TMe-2955"
#> [199] "TMe-536"  "TMe-3128" "TMe-3345" "TMe-3594" "TMe-378"  "TMe-3383"
#> [205] "TMe-712"  "TMe-2041" "TMe-2912" "TMe-3628" "TMe-2217" "TMe-3707"
#> [211] "TMe-2216" "TMe-2965" "TMe-1283" "TMe-3715" "TMe-3631" "TMe-3721"
#> [217] "TMe-215"  "TMe-1226" "TMe-3480" "TMe-397"  "TMe-181"  "TMe-420" 
#> [223] "TMe-280"  "TMe-1734" "TMe-619"  "TMe-3572" "TMe-3547" "TMe-3719"
#> [229] "TMe-1479" "TMe-3397" "TMe-2860" "TMe-34"   "TMe-3234" "TMe-1218"
#> [235] "TMe-3458" "TMe-3051" "TMe-778"  "TMe-1241" "TMe-352"  "TMe-1360"
#> [241] "TMe-737"  "TMe-3638" "TMe-276"  "TMe-434"  "TMe-132"  "TMe-3167"
#> [247] "TMe-509"  "TMe-3275" "TMe-774"  "TMe-1250" "TMe-3599" "TMe-2897"
#> [253] "TMe-226"  "TMe-1700" "TMe-3576" "TMe-259"  "TMe-812"  "TMe-3312"
#> [259] "TMe-1935" "TMe-74"   "TMe-15"   "TMe-190"  "TMe-3359" "TMe-3625"
#> [265] "TMe-39"   "TMe-1301" "TMe-2791" "TMe-3238" "TMe-1566" "TMe-3619"
#> [271] "TMe-2572" "TMe-1353" "TMe-2811" "TMe-1162" "TMe-3027" "TMe-3440"
#> [277] "TMe-1434" "TMe-3481" "TMe-3198" "TMe-663"  "TMe-2979" "TMe-2237"
#> [283] "TMe-270"  "TMe-3256" "TMe-853"  "TMe-1738" "TMe-362"  "TMe-3758"
#> [289] "TMe-1401" "TMe-3278" "TMe-1916" "TMe-234"  "TMe-261"  "TMe-950" 
#> [295] "TMe-635"  "TMe-184"  "TMe-277"  "TMe-107"  "TMe-28"   "TMe-1883"
#> [301] "TMe-268"  "TMe-279"  "TMe-27"   "TMe-1099" "TMe-2688" "TMe-2779"
#> [307] "TMe-3545" "TMe-2058" "TMe-1897" "TMe-116"  "TMe-1265" "TMe-40"  
#> [313] "TMe-2866" "TMe-186"  "TMe-130"  "TMe-773"  "TMe-72"   "TMe-3418"
#> [319] "TMe-725"  "TMe-123"  "TMe-2835" "TMe-3325"
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# Get core sets with PCSS (quantitative and qualitative data)
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

out3 <- pcss.core(data = data, names = "Genotypes",
                  quantitative = quant,
                  qualitative = qual, eigen.threshold = NULL)

# Core sets
out3$cores.info
#>                   Method Size   VarRet
#> 1      By size specified  337 44.63182
#> 2  By threshold variance  859 75.00000
#> 3 By logistic regression  412 50.02493

# Fetch genotype names of core set by size criterion
subset(x = out3, criterion = "size")
#>   [1] "TMe-3163" "TMe-603"  "TMe-3685" "TMe-3223" "TMe-2967" "TMe-3667"
#>   [7] "TMe-3736" "TMe-3292" "TMe-399"  "TMe-3605" "TMe-3705" "TMe-3800"
#>  [13] "TMe-3475" "TMe-2604" "TMe-3573" "TMe-3628" "TMe-616"  "TMe-1985"
#>  [19] "TMe-3392" "TMe-2943" "TMe-3065" "TMe-3396" "TMe-3319" "TMe-901" 
#>  [25] "TMe-2996" "TMe-2853" "TMe-2050" "TMe-3730" "TMe-3249" "TMe-3095"
#>  [31] "TMe-1769" "TMe-3387" "TMe-3398" "TMe-3701" "TMe-2035" "TMe-1730"
#>  [37] "TMe-390"  "TMe-3466" "TMe-812"  "TMe-761"  "TMe-41"   "TMe-608" 
#>  [43] "TMe-3549" "TMe-3281" "TMe-3323" "TMe-731"  "TMe-2531" "TMe-3266"
#>  [49] "TMe-3116" "TMe-2064" "TMe-3115" "TMe-3282" "TMe-696"  "TMe-756" 
#>  [55] "TMe-1416" "TMe-707"  "TMe-3264" "TMe-1661" "TMe-3389" "TMe-3694"
#>  [61] "TMe-3766" "TMe-13"   "TMe-2033" "TMe-3141" "TMe-3297" "TMe-2983"
#>  [67] "TMe-867"  "TMe-412"  "TMe-1239" "TMe-3140" "TMe-1723" "TMe-2352"
#>  [73] "TMe-2010" "TMe-2196" "TMe-138"  "TMe-1403" "TMe-2993" "TMe-606" 
#>  [79] "TMe-798"  "TMe-1919" "TMe-3252" "TMe-2195" "TMe-1124" "TMe-1294"
#>  [85] "TMe-1232" "TMe-717"  "TMe-3437" "TMe-997"  "TMe-2985" "TMe-1506"
#>  [91] "TMe-1307" "TMe-929"  "TMe-3054" "TMe-373"  "TMe-2308" "TMe-2963"
#>  [97] "TMe-1518" "TMe-1902" "TMe-35"   "TMe-620"  "TMe-2045" "TMe-2913"
#> [103] "TMe-241"  "TMe-2955" "TMe-1809" "TMe-588"  "TMe-3641" "TMe-514" 
#> [109] "TMe-3330" "TMe-1608" "TMe-1283" "TMe-1011" "TMe-2952" "TMe-1428"
#> [115] "TMe-1744" "TMe-3025" "TMe-1564" "TMe-3314" "TMe-1383" "TMe-527" 
#> [121] "TMe-3089" "TMe-432"  "TMe-2510" "TMe-623"  "TMe-3272" "TMe-1261"
#> [127] "TMe-705"  "TMe-3805" "TMe-3040" "TMe-465"  "TMe-3690" "TMe-3034"
#> [133] "TMe-3698" "TMe-728"  "TMe-2441" "TMe-3485" "TMe-2439" "TMe-1339"
#> [139] "TMe-86"   "TMe-3581" "TMe-1158" "TMe-2204" "TMe-427"  "TMe-1633"
#> [145] "TMe-659"  "TMe-751"  "TMe-725"  "TMe-3415" "TMe-861"  "TMe-815" 
#> [151] "TMe-421"  "TMe-2329" "TMe-2916" "TMe-1137" "TMe-2043" "TMe-289" 
#> [157] "TMe-93"   "TMe-3467" "TMe-3200" "TMe-3382" "TMe-3406" "TMe-85"  
#> [163] "TMe-1945" "TMe-27"   "TMe-2968" "TMe-1646" "TMe-1992" "TMe-3592"
#> [169] "TMe-1738" "TMe-1248" "TMe-2897" "TMe-5"    "TMe-267"  "TMe-584" 
#> [175] "TMe-3401" "TMe-3230" "TMe-926"  "TMe-3234" "TMe-2733" "TMe-3222"
#> [181] "TMe-3071" "TMe-3565" "TMe-3046" "TMe-3571" "TMe-832"  "TMe-3007"
#> [187] "TMe-1004" "TMe-2984" "TMe-3596" "TMe-2751" "TMe-1775" "TMe-2843"
#> [193] "TMe-925"  "TMe-3299" "TMe-3329" "TMe-1388" "TMe-1273" "TMe-3721"
#> [199] "TMe-3663" "TMe-1098" "TMe-7"    "TMe-2906" "TMe-2151" "TMe-2940"
#> [205] "TMe-2756" "TMe-745"  "TMe-3572" "TMe-3451" "TMe-742"  "TMe-3130"
#> [211] "TMe-3659" "TMe-3277" "TMe-473"  "TMe-2995" "TMe-2998" "TMe-3493"
#> [217] "TMe-2976" "TMe-863"  "TMe-3087" "TMe-2802" "TMe-3066" "TMe-3302"
#> [223] "TMe-835"  "TMe-1579" "TMe-698"  "TMe-2914" "TMe-1600" "TMe-1580"
#> [229] "TMe-64"   "TMe-842"  "TMe-3631" "TMe-3346" "TMe-3085" "TMe-3255"
#> [235] "TMe-3544" "TMe-853"  "TMe-1817" "TMe-438"  "TMe-3533" "TMe-589" 
#> [241] "TMe-886"  "TMe-2862" "TMe-2119" "TMe-365"  "TMe-3207" "TMe-2811"
#> [247] "TMe-2361" "TMe-44"   "TMe-2355" "TMe-1160" "TMe-3599" "TMe-3531"
#> [253] "TMe-39"   "TMe-635"  "TMe-1218" "TMe-6"    "TMe-1725" "TMe-3498"
#> [259] "TMe-1286" "TMe-3238" "TMe-3118" "TMe-3352" "TMe-1958" "TMe-1398"
#> [265] "TMe-694"  "TMe-1401" "TMe-2981" "TMe-203"  "TMe-773"  "TMe-2901"
#> [271] "TMe-304"  "TMe-3101" "TMe-1444" "TMe-1792" "TMe-3088" "TMe-2040"
#> [277] "TMe-3133" "TMe-1079" "TMe-2912" "TMe-34"   "TMe-3575" "TMe-3608"
#> [283] "TMe-312"  "TMe-787"  "TMe-3440" "TMe-3433" "TMe-700"  "TMe-601" 
#> [289] "TMe-2551" "TMe-2004" "TMe-394"  "TMe-2518" "TMe-946"  "TMe-3707"
#> [295] "TMe-1838" "TMe-3026" "TMe-2374" "TMe-3434" "TMe-2748" "TMe-617" 
#> [301] "TMe-2910" "TMe-3043" "TMe-400"  "TMe-2966" "TMe-1875" "TMe-976" 
#> [307] "TMe-3112" "TMe-360"  "TMe-2860" "TMe-3480" "TMe-3209" "TMe-2957"
#> [313] "TMe-196"  "TMe-3569" "TMe-2158" "TMe-2304" "TMe-363"  "TMe-1472"
#> [319] "TMe-3772" "TMe-43"   "TMe-1461" "TMe-1988" "TMe-3055" "TMe-15"  
#> [325] "TMe-656"  "TMe-434"  "TMe-3324" "TMe-391"  "TMe-1147" "TMe-33"  
#> [331] "TMe-154"  "TMe-3443" "TMe-148"  "TMe-59"   "TMe-3601" "TMe-1198"
#> [337] "TMe-3114"

# Fetch genotype names of core set by variance criterion
subset(x = out3, criterion = "variance")
#>   [1] "TMe-3163" "TMe-603"  "TMe-3685" "TMe-3223" "TMe-2967" "TMe-3667"
#>   [7] "TMe-3736" "TMe-3292" "TMe-399"  "TMe-3605" "TMe-3705" "TMe-3800"
#>  [13] "TMe-3475" "TMe-2604" "TMe-3573" "TMe-3628" "TMe-616"  "TMe-1985"
#>  [19] "TMe-3392" "TMe-2943" "TMe-3065" "TMe-3396" "TMe-3319" "TMe-901" 
#>  [25] "TMe-2996" "TMe-2853" "TMe-2050" "TMe-3730" "TMe-3249" "TMe-3095"
#>  [31] "TMe-1769" "TMe-3387" "TMe-3398" "TMe-3701" "TMe-2035" "TMe-1730"
#>  [37] "TMe-390"  "TMe-3466" "TMe-812"  "TMe-761"  "TMe-41"   "TMe-608" 
#>  [43] "TMe-3549" "TMe-3281" "TMe-3323" "TMe-731"  "TMe-2531" "TMe-3266"
#>  [49] "TMe-3116" "TMe-2064" "TMe-3115" "TMe-3282" "TMe-696"  "TMe-756" 
#>  [55] "TMe-1416" "TMe-707"  "TMe-3264" "TMe-1661" "TMe-3389" "TMe-3694"
#>  [61] "TMe-3766" "TMe-13"   "TMe-2033" "TMe-3141" "TMe-3297" "TMe-2983"
#>  [67] "TMe-867"  "TMe-412"  "TMe-1239" "TMe-3140" "TMe-1723" "TMe-2352"
#>  [73] "TMe-2010" "TMe-2196" "TMe-138"  "TMe-1403" "TMe-2993" "TMe-606" 
#>  [79] "TMe-798"  "TMe-1919" "TMe-3252" "TMe-2195" "TMe-1124" "TMe-1294"
#>  [85] "TMe-1232" "TMe-717"  "TMe-3437" "TMe-997"  "TMe-2985" "TMe-1506"
#>  [91] "TMe-1307" "TMe-929"  "TMe-3054" "TMe-373"  "TMe-2308" "TMe-2963"
#>  [97] "TMe-1518" "TMe-1902" "TMe-35"   "TMe-620"  "TMe-2045" "TMe-2913"
#> [103] "TMe-241"  "TMe-2955" "TMe-1809" "TMe-588"  "TMe-3641" "TMe-514" 
#> [109] "TMe-3330" "TMe-1608" "TMe-1283" "TMe-1011" "TMe-2952" "TMe-1428"
#> [115] "TMe-1744" "TMe-3025" "TMe-1564" "TMe-3314" "TMe-1383" "TMe-527" 
#> [121] "TMe-3089" "TMe-432"  "TMe-2510" "TMe-623"  "TMe-3272" "TMe-1261"
#> [127] "TMe-705"  "TMe-3805" "TMe-3040" "TMe-465"  "TMe-3690" "TMe-3034"
#> [133] "TMe-3698" "TMe-728"  "TMe-2441" "TMe-3485" "TMe-2439" "TMe-1339"
#> [139] "TMe-86"   "TMe-3581" "TMe-1158" "TMe-2204" "TMe-427"  "TMe-1633"
#> [145] "TMe-659"  "TMe-751"  "TMe-725"  "TMe-3415" "TMe-861"  "TMe-815" 
#> [151] "TMe-421"  "TMe-2329" "TMe-2916" "TMe-1137" "TMe-2043" "TMe-289" 
#> [157] "TMe-93"   "TMe-3467" "TMe-3200" "TMe-3382" "TMe-3406" "TMe-85"  
#> [163] "TMe-1945" "TMe-27"   "TMe-2968" "TMe-1646" "TMe-1992" "TMe-3592"
#> [169] "TMe-1738" "TMe-1248" "TMe-2897" "TMe-5"    "TMe-267"  "TMe-584" 
#> [175] "TMe-3401" "TMe-3230" "TMe-926"  "TMe-3234" "TMe-2733" "TMe-3222"
#> [181] "TMe-3071" "TMe-3565" "TMe-3046" "TMe-3571" "TMe-832"  "TMe-3007"
#> [187] "TMe-1004" "TMe-2984" "TMe-3596" "TMe-2751" "TMe-1775" "TMe-2843"
#> [193] "TMe-925"  "TMe-3299" "TMe-3329" "TMe-1388" "TMe-1273" "TMe-3721"
#> [199] "TMe-3663" "TMe-1098" "TMe-7"    "TMe-2906" "TMe-2151" "TMe-2940"
#> [205] "TMe-2756" "TMe-745"  "TMe-3572" "TMe-3451" "TMe-742"  "TMe-3130"
#> [211] "TMe-3659" "TMe-3277" "TMe-473"  "TMe-2995" "TMe-2998" "TMe-3493"
#> [217] "TMe-2976" "TMe-863"  "TMe-3087" "TMe-2802" "TMe-3066" "TMe-3302"
#> [223] "TMe-835"  "TMe-1579" "TMe-698"  "TMe-2914" "TMe-1600" "TMe-1580"
#> [229] "TMe-64"   "TMe-842"  "TMe-3631" "TMe-3346" "TMe-3085" "TMe-3255"
#> [235] "TMe-3544" "TMe-853"  "TMe-1817" "TMe-438"  "TMe-3533" "TMe-589" 
#> [241] "TMe-886"  "TMe-2862" "TMe-2119" "TMe-365"  "TMe-3207" "TMe-2811"
#> [247] "TMe-2361" "TMe-44"   "TMe-2355" "TMe-1160" "TMe-3599" "TMe-3531"
#> [253] "TMe-39"   "TMe-635"  "TMe-1218" "TMe-6"    "TMe-1725" "TMe-3498"
#> [259] "TMe-1286" "TMe-3238" "TMe-3118" "TMe-3352" "TMe-1958" "TMe-1398"
#> [265] "TMe-694"  "TMe-1401" "TMe-2981" "TMe-203"  "TMe-773"  "TMe-2901"
#> [271] "TMe-304"  "TMe-3101" "TMe-1444" "TMe-1792" "TMe-3088" "TMe-2040"
#> [277] "TMe-3133" "TMe-1079" "TMe-2912" "TMe-34"   "TMe-3575" "TMe-3608"
#> [283] "TMe-312"  "TMe-787"  "TMe-3440" "TMe-3433" "TMe-700"  "TMe-601" 
#> [289] "TMe-2551" "TMe-2004" "TMe-394"  "TMe-2518" "TMe-946"  "TMe-3707"
#> [295] "TMe-1838" "TMe-3026" "TMe-2374" "TMe-3434" "TMe-2748" "TMe-617" 
#> [301] "TMe-2910" "TMe-3043" "TMe-400"  "TMe-2966" "TMe-1875" "TMe-976" 
#> [307] "TMe-3112" "TMe-360"  "TMe-2860" "TMe-3480" "TMe-3209" "TMe-2957"
#> [313] "TMe-196"  "TMe-3569" "TMe-2158" "TMe-2304" "TMe-363"  "TMe-1472"
#> [319] "TMe-3772" "TMe-43"   "TMe-1461" "TMe-1988" "TMe-3055" "TMe-15"  
#> [325] "TMe-656"  "TMe-434"  "TMe-3324" "TMe-391"  "TMe-1147" "TMe-33"  
#> [331] "TMe-154"  "TMe-3443" "TMe-148"  "TMe-59"   "TMe-3601" "TMe-1198"
#> [337] "TMe-3114" "TMe-3032" "TMe-160"  "TMe-298"  "TMe-1311" "TMe-3185"
#> [343] "TMe-2128" "TMe-3458" "TMe-3781" "TMe-1819" "TMe-830"  "TMe-1814"
#> [349] "TMe-1787" "TMe-3148" "TMe-3359" "TMe-3357" "TMe-340"  "TMe-2814"
#> [355] "TMe-2530" "TMe-47"   "TMe-645"  "TMe-2383" "TMe-2809" "TMe-2973"
#> [361] "TMe-1622" "TMe-1026" "TMe-3639" "TMe-729"  "TMe-25"   "TMe-3633"
#> [367] "TMe-2937" "TMe-2226" "TMe-404"  "TMe-1006" "TMe-1101" "TMe-3445"
#> [373] "TMe-383"  "TMe-4"    "TMe-2997" "TMe-2285" "TMe-1074" "TMe-1272"
#> [379] "TMe-3326" "TMe-477"  "TMe-1250" "TMe-3383" "TMe-1312" "TMe-736" 
#> [385] "TMe-3284" "TMe-280"  "TMe-995"  "TMe-1505" "TMe-3256" "TMe-878" 
#> [391] "TMe-930"  "TMe-2257" "TMe-826"  "TMe-3679" "TMe-1420" "TMe-1521"
#> [397] "TMe-1766" "TMe-1042" "TMe-3020" "TMe-3128" "TMe-279"  "TMe-123" 
#> [403] "TMe-3557" "TMe-1762" "TMe-2217" "TMe-1227" "TMe-1790" "TMe-600" 
#> [409] "TMe-2956" "TMe-754"  "TMe-3481" "TMe-2242" "TMe-3354" "TMe-893" 
#> [415] "TMe-2824" "TMe-1863" "TMe-237"  "TMe-3591" "TMe-251"  "TMe-3273"
#> [421] "TMe-569"  "TMe-3362" "TMe-3773" "TMe-410"  "TMe-28"   "TMe-74"  
#> [427] "TMe-660"  "TMe-3465" "TMe-528"  "TMe-1621" "TMe-2203" "TMe-2123"
#> [433] "TMe-1421" "TMe-994"  "TMe-1262" "TMe-2975" "TMe-1939" "TMe-2947"
#> [439] "TMe-362"  "TMe-706"  "TMe-1964" "TMe-1484" "TMe-480"  "TMe-3166"
#> [445] "TMe-1299" "TMe-420"  "TMe-3308" "TMe-3027" "TMe-510"  "TMe-3069"
#> [451] "TMe-1616" "TMe-431"  "TMe-3540" "TMe-1266" "TMe-3028" "TMe-3594"
#> [457] "TMe-14"   "TMe-2765" "TMe-1300" "TMe-3501" "TMe-206"  "TMe-23"  
#> [463] "TMe-3321" "TMe-3428" "TMe-1553" "TMe-2356" "TMe-774"  "TMe-2757"
#> [469] "TMe-1129" "TMe-575"  "TMe-1806" "TMe-1786" "TMe-38"   "TMe-405" 
#> [475] "TMe-2077" "TMe-1732" "TMe-3365" "TMe-2069" "TMe-609"  "TMe-1051"
#> [481] "TMe-2915" "TMe-3208" "TMe-104"  "TMe-2611" "TMe-1880" "TMe-1366"
#> [487] "TMe-2481" "TMe-3642" "TMe-2502" "TMe-209"  "TMe-1409" "TMe-3143"
#> [493] "TMe-2905" "TMe-1459" "TMe-1956" "TMe-3267" "TMe-330"  "TMe-90"  
#> [499] "TMe-2041" "TMe-2779" "TMe-63"   "TMe-2362" "TMe-3376" "TMe-1969"
#> [505] "TMe-3758" "TMe-1005" "TMe-3438" "TMe-3551" "TMe-2211" "TMe-2058"
#> [511] "TMe-3312" "TMe-3248" "TMe-1765" "TMe-1422" "TMe-3274" "TMe-2200"
#> [517] "TMe-3345" "TMe-3397" "TMe-675"  "TMe-78"   "TMe-2205" "TMe-2172"
#> [523] "TMe-3127" "TMe-845"  "TMe-3325" "TMe-1269" "TMe-618"  "TMe-1020"
#> [529] "TMe-1716" "TMe-1078" "TMe-1302" "TMe-2060" "TMe-184"  "TMe-1891"
#> [535] "TMe-3724" "TMe-1100" "TMe-3625" "TMe-665"  "TMe-2592" "TMe-2705"
#> [541] "TMe-2971" "TMe-1526" "TMe-460"  "TMe-3239" "TMe-1256" "TMe-3752"
#> [547] "TMe-1717" "TMe-1431" "TMe-3471" "TMe-585"  "TMe-1797" "TMe-1965"
#> [553] "TMe-155"  "TMe-3727" "TMe-3010" "TMe-3576" "TMe-210"  "TMe-2935"
#> [559] "TMe-343"  "TMe-1405" "TMe-1643" "TMe-1150" "TMe-176"  "TMe-3558"
#> [565] "TMe-1619" "TMe-2167" "TMe-2946" "TMe-487"  "TMe-359"  "TMe-2131"
#> [571] "TMe-3216" "TMe-66"   "TMe-3242" "TMe-2845" "TMe-20"   "TMe-836" 
#> [577] "TMe-1468" "TMe-2268" "TMe-1176" "TMe-3719" "TMe-3638" "TMe-1067"
#> [583] "TMe-3218" "TMe-737"  "TMe-2169" "TMe-3093" "TMe-2797" "TMe-2066"
#> [589] "TMe-3068" "TMe-57"   "TMe-3715" "TMe-2513" "TMe-1184" "TMe-3478"
#> [595] "TMe-167"  "TMe-1547" "TMe-3455" "TMe-377"  "TMe-3250" "TMe-161" 
#> [601] "TMe-333"  "TMe-2154" "TMe-1668" "TMe-12"   "TMe-53"   "TMe-1864"
#> [607] "TMe-2977" "TMe-3132" "TMe-1836" "TMe-1288" "TMe-332"  "TMe-18"  
#> [613] "TMe-174"  "TMe-594"  "TMe-2394" "TMe-3253" "TMe-70"   "TMe-2532"
#> [619] "TMe-190"  "TMe-1007" "TMe-1425" "TMe-2332" "TMe-3176" "TMe-481" 
#> [625] "TMe-674"  "TMe-1504" "TMe-1860" "TMe-2085" "TMe-1402" "TMe-727" 
#> [631] "TMe-1907" "TMe-3030" "TMe-1271" "TMe-1975" "TMe-283"  "TMe-1293"
#> [637] "TMe-1560" "TMe-1301" "TMe-200"  "TMe-2000" "TMe-2903" "TMe-651" 
#> [643] "TMe-425"  "TMe-1739" "TMe-1204" "TMe-3351" "TMe-2851" "TMe-1359"
#> [649] "TMe-3045" "TMe-1680" "TMe-1242" "TMe-1443" "TMe-1323" "TMe-3021"
#> [655] "TMe-116"  "TMe-1138" "TMe-2161" "TMe-1025" "TMe-771"  "TMe-2337"
#> [661] "TMe-2103" "TMe-428"  "TMe-3150" "TMe-903"  "TMe-1207" "TMe-1474"
#> [667] "TMe-1833" "TMe-2810" "TMe-876"  "TMe-3073" "TMe-2911" "TMe-3317"
#> [673] "TMe-1973" "TMe-1470" "TMe-3547" "TMe-419"  "TMe-3731" "TMe-261" 
#> [679] "TMe-2823" "TMe-1376" "TMe-2917" "TMe-1577" "TMe-752"  "TMe-1572"
#> [685] "TMe-1230" "TMe-3750" "TMe-3620" "TMe-3568" "TMe-2270" "TMe-1675"
#> [691] "TMe-475"  "TMe-1257" "TMe-669"  "TMe-3804" "TMe-415"  "TMe-1423"
#> [697] "TMe-2807" "TMe-3275" "TMe-3053" "TMe-1566" "TMe-3729" "TMe-2835"
#> [703] "TMe-204"  "TMe-1507" "TMe-1889" "TMe-2944" "TMe-1734" "TMe-1107"
#> [709] "TMe-631"  "TMe-3644" "TMe-3545" "TMe-1804" "TMe-610"  "TMe-1993"
#> [715] "TMe-565"  "TMe-3029" "TMe-1305" "TMe-2926" "TMe-3147" "TMe-3643"
#> [721] "TMe-2841" "TMe-3796" "TMe-3598" "TMe-1390" "TMe-1715" "TMe-2388"
#> [727] "TMe-3278" "TMe-2054" "TMe-1776" "TMe-2866" "TMe-2410" "TMe-414" 
#> [733] "TMe-777"  "TMe-3353" "TMe-945"  "TMe-1351" "TMe-170"  "TMe-2124"
#> [739] "TMe-3052" "TMe-1700" "TMe-1483" "TMe-2057" "TMe-3113" "TMe-1995"
#> [745] "TMe-3103" "TMe-1406" "TMe-429"  "TMe-67"   "TMe-1558" "TMe-247" 
#> [751] "TMe-3151" "TMe-2800" "TMe-3074" "TMe-1873" "TMe-3031" "TMe-1140"
#> [757] "TMe-215"  "TMe-1374" "TMe-1328" "TMe-750"  "TMe-2271" "TMe-1481"
#> [763] "TMe-2347" "TMe-3371" "TMe-433"  "TMe-10"   "TMe-3460" "TMe-276" 
#> [769] "TMe-924"  "TMe-3761" "TMe-3174" "TMe-975"  "TMe-3005" "TMe-2950"
#> [775] "TMe-2535" "TMe-747"  "TMe-887"  "TMe-662"  "TMe-456"  "TMe-1830"
#> [781] "TMe-60"   "TMe-3671" "TMe-3527" "TMe-2567" "TMe-3435" "TMe-1922"
#> [787] "TMe-397"  "TMe-417"  "TMe-1910" "TMe-840"  "TMe-2083" "TMe-450" 
#> [793] "TMe-1391" "TMe-2428" "TMe-526"  "TMe-3378" "TMe-398"  "TMe-1382"
#> [799] "TMe-3236" "TMe-1987" "TMe-264"  "TMe-3008" "TMe-54"   "TMe-2568"
#> [805] "TMe-2978" "TMe-2589" "TMe-2084" "TMe-551"  "TMe-3257" "TMe-3084"
#> [811] "TMe-3100" "TMe-3495" "TMe-1979" "TMe-1251" "TMe-2213" "TMe-875" 
#> [817] "TMe-870"  "TMe-277"  "TMe-3051" "TMe-1347" "TMe-3094" "TMe-655" 
#> [823] "TMe-3771" "TMe-1162" "TMe-3261" "TMe-1960" "TMe-40"   "TMe-3336"
#> [829] "TMe-1404" "TMe-1847" "TMe-3335" "TMe-3760" "TMe-2934" "TMe-218" 
#> [835] "TMe-1479" "TMe-3259" "TMe-3220" "TMe-1593" "TMe-3556" "TMe-1698"
#> [841] "TMe-3780" "TMe-1440" "TMe-3019" "TMe-2945" "TMe-464"  "TMe-3276"
#> [847] "TMe-2412" "TMe-208"  "TMe-3110" "TMe-699"  "TMe-3726" "TMe-1694"
#> [853] "TMe-2572" "TMe-885"  "TMe-3564" "TMe-150"  "TMe-1118" "TMe-186" 
#> [859] "TMe-768" 

# Fetch genotype names of core set by logistic regression criterion
subset(x = out3, criterion = "logistic")
#>   [1] "TMe-3163" "TMe-603"  "TMe-3685" "TMe-3223" "TMe-2967" "TMe-3667"
#>   [7] "TMe-3736" "TMe-3292" "TMe-399"  "TMe-3605" "TMe-3705" "TMe-3800"
#>  [13] "TMe-3475" "TMe-2604" "TMe-3573" "TMe-3628" "TMe-616"  "TMe-1985"
#>  [19] "TMe-3392" "TMe-2943" "TMe-3065" "TMe-3396" "TMe-3319" "TMe-901" 
#>  [25] "TMe-2996" "TMe-2853" "TMe-2050" "TMe-3730" "TMe-3249" "TMe-3095"
#>  [31] "TMe-1769" "TMe-3387" "TMe-3398" "TMe-3701" "TMe-2035" "TMe-1730"
#>  [37] "TMe-390"  "TMe-3466" "TMe-812"  "TMe-761"  "TMe-41"   "TMe-608" 
#>  [43] "TMe-3549" "TMe-3281" "TMe-3323" "TMe-731"  "TMe-2531" "TMe-3266"
#>  [49] "TMe-3116" "TMe-2064" "TMe-3115" "TMe-3282" "TMe-696"  "TMe-756" 
#>  [55] "TMe-1416" "TMe-707"  "TMe-3264" "TMe-1661" "TMe-3389" "TMe-3694"
#>  [61] "TMe-3766" "TMe-13"   "TMe-2033" "TMe-3141" "TMe-3297" "TMe-2983"
#>  [67] "TMe-867"  "TMe-412"  "TMe-1239" "TMe-3140" "TMe-1723" "TMe-2352"
#>  [73] "TMe-2010" "TMe-2196" "TMe-138"  "TMe-1403" "TMe-2993" "TMe-606" 
#>  [79] "TMe-798"  "TMe-1919" "TMe-3252" "TMe-2195" "TMe-1124" "TMe-1294"
#>  [85] "TMe-1232" "TMe-717"  "TMe-3437" "TMe-997"  "TMe-2985" "TMe-1506"
#>  [91] "TMe-1307" "TMe-929"  "TMe-3054" "TMe-373"  "TMe-2308" "TMe-2963"
#>  [97] "TMe-1518" "TMe-1902" "TMe-35"   "TMe-620"  "TMe-2045" "TMe-2913"
#> [103] "TMe-241"  "TMe-2955" "TMe-1809" "TMe-588"  "TMe-3641" "TMe-514" 
#> [109] "TMe-3330" "TMe-1608" "TMe-1283" "TMe-1011" "TMe-2952" "TMe-1428"
#> [115] "TMe-1744" "TMe-3025" "TMe-1564" "TMe-3314" "TMe-1383" "TMe-527" 
#> [121] "TMe-3089" "TMe-432"  "TMe-2510" "TMe-623"  "TMe-3272" "TMe-1261"
#> [127] "TMe-705"  "TMe-3805" "TMe-3040" "TMe-465"  "TMe-3690" "TMe-3034"
#> [133] "TMe-3698" "TMe-728"  "TMe-2441" "TMe-3485" "TMe-2439" "TMe-1339"
#> [139] "TMe-86"   "TMe-3581" "TMe-1158" "TMe-2204" "TMe-427"  "TMe-1633"
#> [145] "TMe-659"  "TMe-751"  "TMe-725"  "TMe-3415" "TMe-861"  "TMe-815" 
#> [151] "TMe-421"  "TMe-2329" "TMe-2916" "TMe-1137" "TMe-2043" "TMe-289" 
#> [157] "TMe-93"   "TMe-3467" "TMe-3200" "TMe-3382" "TMe-3406" "TMe-85"  
#> [163] "TMe-1945" "TMe-27"   "TMe-2968" "TMe-1646" "TMe-1992" "TMe-3592"
#> [169] "TMe-1738" "TMe-1248" "TMe-2897" "TMe-5"    "TMe-267"  "TMe-584" 
#> [175] "TMe-3401" "TMe-3230" "TMe-926"  "TMe-3234" "TMe-2733" "TMe-3222"
#> [181] "TMe-3071" "TMe-3565" "TMe-3046" "TMe-3571" "TMe-832"  "TMe-3007"
#> [187] "TMe-1004" "TMe-2984" "TMe-3596" "TMe-2751" "TMe-1775" "TMe-2843"
#> [193] "TMe-925"  "TMe-3299" "TMe-3329" "TMe-1388" "TMe-1273" "TMe-3721"
#> [199] "TMe-3663" "TMe-1098" "TMe-7"    "TMe-2906" "TMe-2151" "TMe-2940"
#> [205] "TMe-2756" "TMe-745"  "TMe-3572" "TMe-3451" "TMe-742"  "TMe-3130"
#> [211] "TMe-3659" "TMe-3277" "TMe-473"  "TMe-2995" "TMe-2998" "TMe-3493"
#> [217] "TMe-2976" "TMe-863"  "TMe-3087" "TMe-2802" "TMe-3066" "TMe-3302"
#> [223] "TMe-835"  "TMe-1579" "TMe-698"  "TMe-2914" "TMe-1600" "TMe-1580"
#> [229] "TMe-64"   "TMe-842"  "TMe-3631" "TMe-3346" "TMe-3085" "TMe-3255"
#> [235] "TMe-3544" "TMe-853"  "TMe-1817" "TMe-438"  "TMe-3533" "TMe-589" 
#> [241] "TMe-886"  "TMe-2862" "TMe-2119" "TMe-365"  "TMe-3207" "TMe-2811"
#> [247] "TMe-2361" "TMe-44"   "TMe-2355" "TMe-1160" "TMe-3599" "TMe-3531"
#> [253] "TMe-39"   "TMe-635"  "TMe-1218" "TMe-6"    "TMe-1725" "TMe-3498"
#> [259] "TMe-1286" "TMe-3238" "TMe-3118" "TMe-3352" "TMe-1958" "TMe-1398"
#> [265] "TMe-694"  "TMe-1401" "TMe-2981" "TMe-203"  "TMe-773"  "TMe-2901"
#> [271] "TMe-304"  "TMe-3101" "TMe-1444" "TMe-1792" "TMe-3088" "TMe-2040"
#> [277] "TMe-3133" "TMe-1079" "TMe-2912" "TMe-34"   "TMe-3575" "TMe-3608"
#> [283] "TMe-312"  "TMe-787"  "TMe-3440" "TMe-3433" "TMe-700"  "TMe-601" 
#> [289] "TMe-2551" "TMe-2004" "TMe-394"  "TMe-2518" "TMe-946"  "TMe-3707"
#> [295] "TMe-1838" "TMe-3026" "TMe-2374" "TMe-3434" "TMe-2748" "TMe-617" 
#> [301] "TMe-2910" "TMe-3043" "TMe-400"  "TMe-2966" "TMe-1875" "TMe-976" 
#> [307] "TMe-3112" "TMe-360"  "TMe-2860" "TMe-3480" "TMe-3209" "TMe-2957"
#> [313] "TMe-196"  "TMe-3569" "TMe-2158" "TMe-2304" "TMe-363"  "TMe-1472"
#> [319] "TMe-3772" "TMe-43"   "TMe-1461" "TMe-1988" "TMe-3055" "TMe-15"  
#> [325] "TMe-656"  "TMe-434"  "TMe-3324" "TMe-391"  "TMe-1147" "TMe-33"  
#> [331] "TMe-154"  "TMe-3443" "TMe-148"  "TMe-59"   "TMe-3601" "TMe-1198"
#> [337] "TMe-3114" "TMe-3032" "TMe-160"  "TMe-298"  "TMe-1311" "TMe-3185"
#> [343] "TMe-2128" "TMe-3458" "TMe-3781" "TMe-1819" "TMe-830"  "TMe-1814"
#> [349] "TMe-1787" "TMe-3148" "TMe-3359" "TMe-3357" "TMe-340"  "TMe-2814"
#> [355] "TMe-2530" "TMe-47"   "TMe-645"  "TMe-2383" "TMe-2809" "TMe-2973"
#> [361] "TMe-1622" "TMe-1026" "TMe-3639" "TMe-729"  "TMe-25"   "TMe-3633"
#> [367] "TMe-2937" "TMe-2226" "TMe-404"  "TMe-1006" "TMe-1101" "TMe-3445"
#> [373] "TMe-383"  "TMe-4"    "TMe-2997" "TMe-2285" "TMe-1074" "TMe-1272"
#> [379] "TMe-3326" "TMe-477"  "TMe-1250" "TMe-3383" "TMe-1312" "TMe-736" 
#> [385] "TMe-3284" "TMe-280"  "TMe-995"  "TMe-1505" "TMe-3256" "TMe-878" 
#> [391] "TMe-930"  "TMe-2257" "TMe-826"  "TMe-3679" "TMe-1420" "TMe-1521"
#> [397] "TMe-1766" "TMe-1042" "TMe-3020" "TMe-3128" "TMe-279"  "TMe-123" 
#> [403] "TMe-3557" "TMe-1762" "TMe-2217" "TMe-1227" "TMe-1790" "TMe-600" 
#> [409] "TMe-2956" "TMe-754"  "TMe-3481" "TMe-2242"