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Changelog

Source: NEWS.md

EvaluateCore 0.1.5

UPDATED FUNCTIONS:

  • diversity.evaluate.core - Added more diversity indices such as Simpson’s evenness or equitability, Effective number of species for the Shannon -Weaver Diversity Index and McIntosh Evenness Index.

EvaluateCore 0.1.4

NEW FUNCTIONS:

  • rpr.evaluate.core - Added Ratio of Phenotype Retained (Li et al., 2002).
  • vpf.evaluate.core - Added Variance of Phenotypic Frequency (Li et al., 2002).
  • scv.evaluate.core - Added Synthetic Variation Coefficient (Dong, 1998; Dong et al., 2001).

UPDATED FUNCTIONS:

  • snk.evaluate.core, wilcox.evaluate.core, ttest.evaluate.core, signtest.evaluate.core, levene.evaluate.core, iqr.evaluate.core, cr.evaluate.core, vr.evaluate.core, scv.evaluate.core, box.evaluate.core, pdfdist.evaluate.core, qq.evaluate.core, percentdiff.evaluate.core, pca.evaluate.core, bar.evaluate.core, chisquare.evaluate.core, coverage.evaluate.core, diversity.evaluate.core, rpr.evaluate.core, vpf.evaluate.core, corr.evaluate.core, dist.evaluate.core & freqdist.evaluate.core - Updated to handle missing date (ignore or impute missing data and also display of counts).
  • cr.evaluate.core - Added computation of Changeable Rate of Maximum, Minimum and Mean (Wang et al. 2007).
  • percentdiff.evaluate.core - Added Percentage of range ratios smaller than 0.70 (Diwan et al. 1998).
  • bar.evaluate.core, box.evaluate.core & freqdist.evaluate.core - Repaced depreciated ggplot2 functions/features such as aes_string() and dot-dot notation (..prop..).

EvaluateCore 0.1.3

NEW FUNCTIONS:

  • diversity.evaluate.core - Upgraded shannon.evaluate.core (now deprecated) with even more diversity indices.

UPDATED FUNCTIONS:

  • box.evaluate.core - Replace deprecated arg from ggplot2::stat_summary.
  • freqdist.evaluate.core - Fix x scale limit.

OTHER NOTES:

  • Fixed minor typos in bar.evaluate.core, dit.evaluate.core and freqdist.evaluate.core.
  • Fixed missing mathjaxr in Namespace.
  • Remove dependency on ccChooser as it is depreciated. Add cassava_EC and cassava_CC datasets and use it in all the examples instead of ccChooser::dactylis_EC and ccChooser::dactylis_CC.

EvaluateCore 0.1.2

OTHER NOTES:

  • Converted all equations in Rd files to MathJaxusing mathjaxr.
  • Fixed ‘LazyData’ is specified without a ‘data’ directory (as there is no /data folder).

EvaluateCore 0.1.1

  • First release

NEW FUNCTIONS:

  • freqdist.evaluate.core - Plots frequency distribution histograms.

EvaluateCore 0.1.0

  • Pre-release

EvaluateCore 0.0.0.9000

  • Pre-release