rmelting: R Interface to MELTING 5 logo

Version : 1.7.1; License: GPL-2|GPL-3
Aravind, J.1 and Krishna, G. K.2
  1. Division of Germplasm Conservation, ICAR-National Bureau of Plant Genetic Resources, New Delhi
  2. Division of Crop Physiology, ICAR-Indian Agricultural Research Institute, New Delhi


Description

R interface to the MELTING 5 program (https://www.ebi.ac.uk/biomodels-static/tools/melting/) to compute melting temperatures of nucleic acid duplexes along with other thermodynamic parameters.

Installation

The package can be installed from Bioconductor as follows.

if (!"BiocManager" %in% rownames(installed.packages())) 
  install.packages("BiocManager")
BiocManager::install("rmelting")

The development version can be installed from github as follows.

if (!require('devtools')) install.packages('devtools')
devtools::install_github("aravind-j/rmelting")

Detailed tutorial

For a detailed tutorial on how to used this package type:

browseVignettes(package = 'rmelting')

What’s new

To know whats new in this version type:

news(package='rmelting')

Bioconductor checks and metrics

Bioc release version

Pkg Bioc release version

in Bioc release

Bioc release status

Bioc updated

Bioc Download rank

Bioc devel version

Pkg Bioc devel version

in Bioc devel

Bioc dev status

Bioc updated

Bioc Download rank

Citing rmelting

To cite the methods in the package use:

citation("rmelting")

To cite the R package 'rmelting' in publications use:

  Aravind, J. and Krishna, G. K. (2021).  rmelting: R Interface to
  MELTING 5. R package version 1.7.1,
  https://aravind-j.github.io/rmelting/.

A BibTeX entry for LaTeX users is

  @Manual{,
    title = {rmelting: R Interface to MELTING 5},
    author = {J. Aravind and G. K. Krishna},
    year = {2021},
    note = {R package version 1.7.1},
    note = {https://aravind-j.github.io/rmelting/},
  }

This free and open-source software implements academic research by the
authors and co-workers. If you use it, please support the project by
citing the package.