Package index

Helpers

group_constrained_order(): Ordering by keeping defined groups together
reorder_dend_by_groups(): Reorder a dendrogram to keep specified groups of tips adjacent

diversity.calc(): Compute Diversity Measures
diversity.compare(): Compare Diversity Measures
berger_parker() berger_parker_reciprocal() simpson() gini_simpson() simpson_max() simpson_reciprocal() simpson_relative() simpson_evenness() shannon() shannon_max() shannon_relative() shannon_ens() mcintosh_diversity() mcintosh_evenness() smith_wilson() heip_evenness() margalef_index() menhinick_index() brillouin_index() hill_number() renyi_entropy() tsallis_entropy() hill_evenness(): Diversity Index Functions
perm.test.global() perm.test.pairwise(): Permutation Tests
bootstrap.ci(): Bootstrap Confidence Intervals
diversity.profile(): Generate Diversity Profiles for Parametric Indices

freq_distribution(): Plot Frequency Distribution and Density Plots
groupwise_bar(): Plot Group-wise Bar Plots
groupwise_histogram(): Plot Group-wise Histograms
groupwise_dumbell(): Plot Group-wise Dumbell Plots
uniform_barwidth_grid(): Plot a List of ggplot2 Barplots as a Grid with with Uniform Width of the Bars
remove_scales(): Remove scales from ggplot objects
dnorm_ggplot(): Function to Add Normal Distribution Curve in ggplot2 histogram

pairwise.augmentedRCBD(): Perform Pairwise t Tests of Adjusted Means from augmentedRCBD Output
mse.bartlett.test(): Bartlett's Test of Homogeneity of Error Variances
summary_quant() summary_qual(): Summary Statistics of Qualitative and Quantitative trait data