Changelog
Source:NEWS.md
germinationmetrics 0.1.9
NEW FUNCTIONS:
-
geom_line2
- A modification ofggplot2::geom_line
to plot both lines and points together.
UPDATED FUNCTIONS:
-
FourPHFfit
- Added better error handling. Now gracefully fails by returning empty output due to convergence errors or when fitting is not possible. -
FourPHFfit.bulk
- Added better convergence error handling. Added grid search for finding starting values. -
plot.FourPHFfit.bulk
- Now usesgeom_errorbar
for showing uniformity. Added better plotting without overlap usinggeom_line2
. -
t50
- Fixes bug causing incorrect results when multiple values of Ni and Nj are present (Thanks to Aude Maugarny @amaugarn). -
GermValue
&GermSpeed
- Updated calculations to ignroeNaN
values. -
EmergenceRateIndex
- Fix error due to missingtotal.seeds
argument.
germinationmetrics 0.1.8
CRAN release: 2023-08-18
UPDATED FUNCTIONS:
-
FirstGermTime
,LastGermTime
,TimeSpreadGerm
- Fixed issue with incorrect display of results in case of intervals which are not in days (Thanks to D. Vijay Dunna.Vijay[at]icar.gov.in). -
FourPHFfit
,plot.FourPHFfit
FourPHFfit.bulk
andplot.FourPHFfit.bulk
- Replaced fitting usingminpack.lm::nlsLM
withgslnls::gsl_nls
. -
FourPHFfit.bulk
andplot.FourPHFfit.bulk
- Fixed issue with plotting of cumulative data withshow.points = TRUE
(Thanks to D. Vijay for Dunna.Vijay[at]icar.gov.in). -
FourPHFfit.bulk
- Added fit quality evaluation in output. -
VarGermTime
,SEGermTime
,SEGermRate
,CUGerm
- Fixed calculation bug with cumulative data.
germinationmetrics 0.1.7
CRAN release: 2022-08-28
germinationmetrics 0.1.6
CRAN release: 2022-06-15
UPDATED FUNCTIONS:
-
FirstGermTime
,LastGermTime
andPeakGermTime
- Updated documentation with formula. -
EmergenceRateIndex
- Depreciate erroneousmethod
argument options ofmelville
andmelvillesantanaranal
and replace them withshmueligoldberg
andsgsantanaranal
respectively.GermSpeedCorrected
- Use germination percentage instead of counts. -
EmergenceRateIndex
,GermIndex
,GermSpeedCorrected
,GermValue
,GermRateRecip
andTimsonsIndex
- Minor documentation update.
germinationmetrics 0.1.5
CRAN release: 2021-02-17
germinationmetrics 0.1.4
CRAN release: 2020-06-16
NEW FUNCTIONS:
-
FourPHFfit.bulk
- Wrapper function aroundFourPHFfit
for multiple samples. -
GermIndex
- Compute germination index according to Melville et al., (1980). -
EmergenceRateIndex
- Compute emergence rate index according to Shmueli and Goldberg (1971), Bilbro and Wanjura (1982), and Fakorede and Ayoola (1980).
UPDATED FUNCTIONS:
-
FourPHFfit
- Added more checks for the input argumentsumax
,umin
,xp
,tries
andtmax
. -
MeanGermPercent
,MeanGermNumber
,GermSynchrony
,GermUncertainty
,TimsonsIndex
,GermRateGeorge
,GermSpeed
,GermSpeedAccumulated
,FirstGermTime
,GermValue
,PeakValue
,WeightGermPercent
,t50
,MeanGermRate
,MeanGermTime
,germination.indices
,FourPHFfit
andFourPHFfit.bulk
- Fixed the check for uniformity of intervals to handle non-integer values correctly. Closes issue #3.(Thanks to Jonas Ohlsson [@jonasoh]) -
TimsonsIndex
andGermRateGeorge
- Fixed to handle interval data other than days.
VIGNETTE:
- Fixed details of Median germination time in Table 3.
- Fixed typo in formula for CUG in Table 3.
- Added reference for Coefficient of variation of the germination time in Table 3.
- Reverted to using system certificates instead of RCurl ones for fetching and displaying version history as suggested by Prof. Brian Ripley (ripley@stats.ox.ac.uk).
OTHER NOTES:
- Error in case of non-uniform intervals converted to warning.
- Fixed documentation errors in
FourPHFfit
andCVGermTime
. - Updated documentation for
GermSpeed
,GermSpeedAccumulated
,CUGerm
MeanGermRate
,SEGermRate
,CVG
,MeanGermTime
,VarGermTime
,SEGermTime
,GermUncertainty
,GermSynchrony
,MeanGermPercent
,MeanGermNumber
,WeightGermPercent
,TimsonsIndex
,GermRateGeorge
andGermSynchrony
. - Converted all equations in Rd files to
MathJax
usingmathjaxr
- Added long running examples to
\donttest
ingermination.indices
,plot.FourPHFfit
,gcdata
andFourPHFfit.bulk
.
germinationmetrics 0.1.3
CRAN release: 2019-01-19
NEW FUNCTIONS:
-
WeightGermPercent
- Compute the Weighted germination percentage. -
germination.indices
- wrapper function to compute germination indices in batch.
UPDATED FUNCTIONS:
-
CVGermTime
- Fixed error in function name (CVSEGermTime
). -
TimsonsIndex
- Fixed error in method name (khanungar
). -
GermSpeed
andGermSpeedAccumulated
- Updated with option to use percentage germination in addition to germination counts. -
GermSpeedCorrected
- Updated with option to useGermSpeedAccumulated
in addition toGermSpeed
. -
GermValue
- Updated with option to consider time from start of test in addition to time from onset of germination.
germinationmetrics 0.1.2
CRAN release: 2018-10-31
OTHER NOTES:
- Removed non-ASCII symbols in
inst/REFERENCES.bib
being used byRdpack
macro to enforce UTF-8 encoding. - Added inline citations in documentation with Rdpack
\insertCite{}{}
and replaced all\insertRef{}{}
with\insertAllCited{}
. - Fixed https link issue in vignette.
- Added mirror set command in vignette.
- Added
XML
,RCurl
andhttr
to suggests.
germinationmetrics 0.1.1
CRAN release: 2018-07-26
UPDATED FUNCTIONS:
-
FourPHFfit
- Fixed code to accommodate changes in the new release ofbroom
package. -
FourPHFfit
- Separated plot method to new functionplot.FourPHFfit
.