NEWS.md
geom_line2 - A modification of ggplot2::geom_line to plot both lines and points together.FourPHFfit.bulk - Added better convergence error handling. Added grid search for finding starting values.plot.FourPHFfit.bulk - Now uses geom_errorbar for showing uniformity. Added better plotting without overlap using geom_line2.t50 - Fixes bug causing incorrect results when multiple values of Ni and Nj are present (Thanks to Aude Maugarny @amaugarn).FirstGermTime, LastGermTime, TimeSpreadGerm - Fixed issue with incorrect display of results in case of intervals which are not in days (Thanks to D. Vijay Dunna.Vijay[at]icar.gov.in).FourPHFfit, plot.FourPHFfit FourPHFfit.bulk and plot.FourPHFfit.bulk - Replaced fitting using minpack.lm::nlsLM with gslnls::gsl_nls.FourPHFfit.bulk and plot.FourPHFfit.bulk - Fixed issue with plotting of cumulative data with show.points = TRUE (Thanks to D. Vijay for Dunna.Vijay[at]icar.gov.in).FourPHFfit.bulk - Added fit quality evaluation in output.VarGermTime, SEGermTime, SEGermRate, CUGerm - Fixed calculation bug with cumulative data.FirstGermTime, LastGermTime and PeakGermTime - Updated documentation with formula.EmergenceRateIndex - Depreciate erroneous method argument options of melville and melvillesantanaranal and replace them with shmueligoldberg and sgsantanaranal respectively. GermSpeedCorrected - Use germination percentage instead of counts.EmergenceRateIndex, GermIndex, GermSpeedCorrected, GermValue, GermRateRecip and TimsonsIndex - Minor documentation update.FourPHFfit.bulk - Wrapper function around FourPHFfit for multiple samples.GermIndex - Compute germination index according to Melville et al., (1980).EmergenceRateIndex - Compute emergence rate index according to Shmueli and Goldberg (1971), Bilbro and Wanjura (1982), and Fakorede and Ayoola (1980).FourPHFfit - Added more checks for the input arguments umax, umin, xp, tries and tmax.MeanGermPercent, MeanGermNumber, GermSynchrony, GermUncertainty, TimsonsIndex, GermRateGeorge, GermSpeed, GermSpeedAccumulated, FirstGermTime, GermValue, PeakValue, WeightGermPercent, t50, MeanGermRate, MeanGermTime, germination.indices, FourPHFfit and FourPHFfit.bulk - Fixed the check for uniformity of intervals to handle non-integer values correctly. Closes issue #3.(Thanks to Jonas Ohlsson [@jonasoh])TimsonsIndex and GermRateGeorge- Fixed to handle interval data other than days.FourPHFfit and CVGermTime.GermSpeed, GermSpeedAccumulated, CUGerm MeanGermRate, SEGermRate, CVG, MeanGermTime, VarGermTime, SEGermTime, GermUncertainty, GermSynchrony, MeanGermPercent, MeanGermNumber, WeightGermPercent, TimsonsIndex, GermRateGeorge and GermSynchrony.MathJaxusing mathjaxr
\donttest in germination.indices, plot.FourPHFfit, gcdata and FourPHFfit.bulk.WeightGermPercent - Compute the Weighted germination percentage.germination.indices - wrapper function to compute germination indices in batch.CVGermTime - Fixed error in function name (CVSEGermTime).TimsonsIndex - Fixed error in method name (khanungar).GermSpeed and GermSpeedAccumulated - Updated with option to use percentage germination in addition to germination counts.GermSpeedCorrected - Updated with option to use GermSpeedAccumulated in addition to GermSpeed.GermValue - Updated with option to consider time from start of test in addition to time from onset of germination.inst/REFERENCES.bib being used by Rdpack macro to enforce UTF-8 encoding.\insertCite{}{} and replaced all \insertRef{}{} with \insertAllCited{}.XML, RCurl and httr to suggests.FourPHFfit - Fixed code to accommodate changes in the new release of broom package.FourPHFfit - Separated plot method to new function plot.FourPHFfit.